BAC Information

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BAC

Clone NameMSMg01-358P16
Chromosome2 (Build37)
Map Location 164,858,194 - 165,034,535
singlet/doubletdoublet
Overlap geneNcoa5, Cd40, Cdh22
Upstream geneLOC381404, Tomm34, Stk4, Kcns1, Wfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2, Svs3b, Svs4, Svs3a, Svs6, Svs5, Slpi, Matn4, Rbpjl, Sdc4, 2610042O14Rik, 1700126L10Rik, Dbndd2, Pigt, LOC670507, Wfdc2, OTTMUSG00000016288, Wfdc6a, Spinlw1, Wfdc8, Wfdc6b, Wfdc16, OTTMUSG00000001088, Wfdc10, LOC629761, Wfdc13, Spint4, OTTMUSG00000016293, Wfdc3, Dnttip1, Ube2c, Tnnc2, Snx21, Acot8, Zswim3, Zswim1, 1700020C07Rik, Neurl2, Ctsa, Pltp, F730014I05Rik, Zfp335, LOC629777, Mmp9, Slc12a5
Downstream geneSlc35c2, Elmo2, Gm1008, Zfp334, 4833422F24Rik, Slc13a3, 2810408M09Rik, Slc2a10, Eya2, Prkcbp1, LOC546780, Ncoa3, Sulf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358P16.T7 (MSMg01no358_p16.b1)MSMg01-358P16.TJ (MSMg01no358_p16.g1)
ACCAG468505AG468506
length703716
length of high quality
(start - end)		565 (38 - 602)486 (67 - 552)
definitionCHROMAT_FILE: MSMg01no358_p16.b1 PHD_FILE: MSMg01no358_p16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:23 2005CHROMAT_FILE: MSMg01no358_p16.g1 PHD_FILE: MSMg01no358_p16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(165,033,974 - 165,034,535)(164,858,194 - 164,858,679)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCC
TTGGCTTCAGCACTTTCTAGCAAATGACAACTAAGAGAAACTCAACTCAC
CATCTCTCCAAAGCAGTGCCCCATAGCCTACGCTCAGTATCACCCTGCCT
CCACTTCTGGAGTCATTCCTTTAGATTTCTCCTAGATGAGGAGGATCATG
GGACAACAGGTCTCCCTGAAGCAGCACCAAGAATGGTGCTCTGGCCATCA
TTATCCTAAAGACAAGGGATGAAGGGACCGGACCCTAGACAGTTTGGAAG
GCCTTTTCCTTCCAGGCTTGGGCAATAAGAAAAGGGACAGCCCAAAGTGT
GAGTCTCAGCTTATCCCCAGAGAAATTCAGTTTGCCAACCTGTGCCCTGG
ATTCCTCTTCAATCAGAGATTATAATTTGTTCCTCAAGACTTTGGCTGGC
AAGACAGCTCAGTGGGCAAAGGCACTCGCTGCCAAACCTGAGGGGCCACC
TCTAATCCCCGGGCCTAACTTTATGGAAGGAGATAACGGAAGCCTGAAAG
TTACCCTCTGACTTCCACACGTCAGCCATGTGTGTGCCCATATGCGTACA
CACTAAAATAAAGAAATGCTAGTTTAAAAAAAATGTGTAAGAAATAAGAT
ACTCTAACCAGGCACAGGGGCACGTGGTTATAAACCCAGCACTTGGAACC
CTG

GTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAGTTCTCACAGTGCAGGAAGCTTTTAAAGGCACT
GCCATCTGCAGGCCGCAGGCATGGAATGCCTGGAATAGTTATTTACAATA
AAGTTTCAGAGCAAAGCATTGTTTATTTAGCTTGGGGCACTGGTAGATGA
GGCTCCACTTGCTGATGTTCGGAAATGGGACTTCCAAGTCAAATCAAATT
TCCCTTGCTTCTTTGTACATTATTGCTCCTGAGAAGTTTGGGACCAATGG
ATGATCTTATGTTTAGTTCTATTCTGTGCTCAACCTGAGGTCAGCCCCCC
AAAATACAGACTTCTTGTCATACAGCCCTTGGTGCTGGGGTATCTGGAAT
GGTCCAAGTTGGCTTTTCTGAATTTCCTTTCAGAAAATAAAGTAAATCTG
CTCTCACACTTTTTAAAAACTGAATTTATGATCAGATAGCTAATGGGACA
TGAAACAGCTGATATCTAGAAAAATACCTTCCATTTAGTCTTGCAATGTG
GTTGTTTTGCTAGCACATTATACAAGGAGAAGCAGTCTCCTATGTTTCGG
TAGAGACTAACGCATGTCTAGGTGCTCAAAAATTATTTGAAAGAGGAAAG
ACCATCCTAATTGGAAAAACAAACCACTAGGAAGGTAGTATGGACGTCTA
ACCTCATCCCTGTGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_p16.b1 MSMg01no358_p16.b1 CHROMAT_FILE:
MSMg01no358_p16.b1 PHD_FILE: MSMg01no358_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:23 2005
         (565 letters)



>mm_chr2_165033930_165034894
          Length = 965

 Score =  986 bits (510), Expect = 0.0
 Identities = 549/562 (97%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctccttggcttcagcactttctagcaaatgacaactaagagaaactcaactcac 63
           |||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ggaattctccttggcaggagcactttctagcaaatgacaactaagagaaactcaactcac 547

                                                                       
Query: 64  catctctccaaagcagtgccccatagcctacgctcagtatcaccctgcctccacttctgg 123
           |||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||
Sbjct: 546 catctctccaaagcagcgccccatagcctacactcagcatcaccctgcctccacttctgg 487

                                                                       
Query: 124 agtcattcctttagatttctcctagatgaggaggatcatgggacaacaggtctccctgaa 183
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 486 agtcattcctttagatttctcctagatgaggaggatcatgggataacaggtctccctgaa 427

                                                                       
Query: 184 gcagcaccaagaatggtgctctggccatcattatcctaaagacaagggatgaagggaccg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 426 gcagcaccaagaatggtgctctggccatcattatcctaaagacaagggatgaagggacca 367

                                                                       
Query: 244 gaccctagacagtttggaaggccttttccttccaggcttgggcaataagaaaagggacag 303
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gaccctagacagtttggaaagccttttccttccaggcttgggcaataagaaaagggacag 307

                                                                       
Query: 304 cccaaagtgtgagtctcagcttatccccagagaaattcagtttgccaacctgtgccctgg 363
           | ||| |||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 306 cacaaggtgtgagtctcagcttatccccagggaaattcagtttgccaacctttgccctgg 247

                                                                       
Query: 364 attcctcttcaatcagagattataatttgttcctcaagactttggctggcaagacagctc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 attcctcttcaatcagagattataatttgttcctcaagactttggctggcaagacagctc 187

                                                                       
Query: 424 agtgggcaaaggcactcgctgccaaacctgaggggccacctctaatccccgggcctaact 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 agtgggcaaaggcactcgctgccaaacctgaggggccacctctaatccccgggcctaact 127

                                                                       
Query: 484 ttatggaaggagataacggaagcctgaaagttaccctctgacttccacacgtcagccatg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 ttatggaaggagataacggaagcctgaaagttaccctctgacttccacacgtcagccatg 67

                                 
Query: 544 tgtgtgcccatatgcgtacaca 565
           ||||||||||||||||||||||
Sbjct: 66  tgtgtgcccatatgcgtacaca 45


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space:   530025
Effective search space used:   530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no358_p16.g1 MSMg01no358_p16.g1 CHROMAT_FILE:
MSMg01no358_p16.g1 PHD_FILE: MSMg01no358_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:23 2005
         (486 letters)



>mm_chr2_164857994_164858879
          Length = 886

 Score =  932 bits (482), Expect = 0.0
 Identities = 485/486 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttctcacagtgcaggaagcttttaaaggcactgccatctgcaggccgcaggcatggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttctcacagtgcaggaagcttttaaaggcactgccatctgcaggccgcaggcatggaa 260

                                                                       
Query: 61  tgcctggaatagttatttacaataaagtttcagagcaaagcattgtttatttagcttggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcctggaatagttatttacaataaagtttcagagcaaagcattgtttatttagcttggg 320

                                                                       
Query: 121 gcactggtagatgaggctccacttgctgatgttcggaaatgggacttccaagtcaaatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcactggtagatgaggctccacttgctgatgttcggaaatgggacttccaagtcaaatca 380

                                                                       
Query: 181 aatttcccttgcttctttgtacattattgctcctgagaagtttgggaccaatggatgatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatttcccttgcttctttgtacattattgctcctgagaagtttgggaccaatggatgatc 440

                                                                       
Query: 241 ttatgtttagttctattctgtgctcaacctgaggtcagccccccaaaatacagacttctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttatgtttagttctattctgtgctcaacctgaggtcagccccccaaaatacagacttctt 500

                                                                       
Query: 301 gtcatacagcccttggtgctggggtatctggaatggtccaagttggcttttctgaatttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcatacagcccttggtgctggggtatctggaatggtccaagttggcttttctgaatttc 560

                                                                       
Query: 361 ctttcagaaaataaagtaaatctgctctcacactttttaaaaactgaatttatgatcaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctttcagaaaataaagtaaatctgctctcacactttttaaaaactgaatttatgatcaga 620

                                                                       
Query: 421 tagctaatgggacatgaaacagctgatatctagaaaaataccttccatttagtcttgcaa 480
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagctaatgggacatgaaactgctgatatctagaaaaataccttccatttagtcttgcaa 680

                 
Query: 481 tgtggt 486
           ||||||
Sbjct: 681 tgtggt 686


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space:   416976
Effective search space used:   416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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