BAC Information

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BAC

Clone NameMSMg01-359D17
Chromosome2 (Build37)
Map Location 71,576,301 - 71,710,869
singlet/doubletdoublet
Overlap geneItga6
Upstream geneTlk1, Mettl8, 4833418A01Rik, Cybrd1, Dync1i2, Slc25a12, LOC667528, Hat1, LOC100040177, Metapl1, LOC100040207, Dlx1, Dlx1as, Dlx2, Gm1631
Downstream genePdk1, Rapgef4, LOC100040270, B230120H23Rik, Cdca7, LOC383712, LOC635960, LOC100039928, 6430710C18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359D17.T7 (MSMg01no359_d17.b1)MSMg01-359D17.TJ (MSMg01no359_d17.g1)
ACCAG468695AG468696
length777774
length of high quality
(start - end)		402 (24 - 425)376 (54 - 429)
definitionCHROMAT_FILE: MSMg01no359_d17.b1 PHD_FILE: MSMg01no359_d17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:41 2005CHROMAT_FILE: MSMg01no359_d17.g1 PHD_FILE: MSMg01no359_d17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,710,473 - 71,710,869)(71,576,301 - 71,576,676)
sequence
XXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCACAGCAACGAAAGTCC
CGGGAAGAGCGCGTTGAAACACTTTATGCAAGCAATATTGCCACAGTACT
TAAAGACTACTCGCTCTTTTTCTGTTAACTCATCTTAGAGTTACAATGTG
CCTGCTCCATCTTTTCAATGTATAGAAATAGTGAATGTAGGATTAGAACA
TATTTAATATCTAACCCCACGAAAATCACGTCTGTCTTCTGAACACTGTA
AAGTCCCCATCCAACTACCCTAACATTTGCTGTGTCTTTGGTGCAAGAAA
ACTATCCTGCCACGTGTGAAGTTTATCAATTATGTAGAATACACACCGAA
TAACACTTCATAGTTCCATGCTGGTCGCTTTTGGGTTTTGTTTTGGTTTT
GTTTATGTTTTATGAGACAGGGTTGCTCTGTATAGNCGCGACTGTCCTGG
AACTCGCTCTGTAGACCATGCTGGCCTCGAAACCAGAAATCCACCTGCCT
CTGCCTCCCAGGTGGTTGAATTAATGGCTTGTGCCACCTCTGCCCCGCTC
GTCACTGTGTTTTGATTAATTCCCCACCCTATTCATTTTGGCACGCCACC
CATTTTTCTTTTTCTCTTTTCCTTTTCCCTTCTCTTTGTATTACACCTCT
TTTTACCCCCCCCCTTCTTTCCTTTCCGCTGTTGTGCTTATATTTATATT
TCTCCCACCTCTTCTTCTTACTCCTCTTATCTCTCTCCCTTTCATCTCTA
CCCTTTTTTTCCCGCCCTTATCTCTTA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXAAAAAAAAAAGAATCGTAAGTTGAATCTCTTGTTCAGCAGTATGAAA
ATAAGAAGTAAAAGAGACTTCTAGACTTCAGAGGCAGTAAGGTATGGGAA
CACGGGTGACTGTCACTGACTGGTGTATGACTATTAAAATCCCAGTGTCT
TCAGTAATATCTCTCCAGCCTTCCTAAAAAGATCTTAGAAAGAATACATT
CAACAAAGCATATTTACATTTCTGATTATGAATGTTTGTGACAAAAGGAG
GGGTTTGTGGCTTCATGTAATCCTGCAGATTTTGCCGCTAATCTCCCCTT
CATTCCTTCGAATTATCTGTGCCCTGGGTGTCCTGGTCTCTCGGGCCTAT
CTTAGCCTTGGGTGGCTCAGCAAGTTACCCATGAGACTGCAGGCAGGAAT
TTCCATTCTCTTTACCCCCAGGTAAAACTGCCTTGGCCTGTCTGCGAAGA
CTAATTATAAGAATGTCCAGGAAACTCTTTTTCAATACTTGTTTGGCCCC
GAATTTCGCCCTTTTCCTCTTCCTTACTACCACCACCCCATTACAATTTT
CGATCCTTCTGTTTTTTTTGCCCTCTCTTTCTTTCCCTGTTTCTTTTCAT
ACCTTACCTCCCTCATCTTATTTTTATTTCTTCCCCTCTTCTTTTCTTCA
TTTTATAACAAATTACCTTTCATCCACAATTCTCTCTTTGTCCTCCCCTT
ACCCCTTTCCTCTTTCCTCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_d17.b1 MSMg01no359_d17.b1 CHROMAT_FILE:
MSMg01no359_d17.b1 PHD_FILE: MSMg01no359_d17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:41 2005
         (402 letters)



>mm_chr2_71710269_71711070
          Length = 802

 Score =  737 bits (381), Expect = 0.0
 Identities = 393/397 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccacagcaacgaaagtcccgggaagagcgcgttgaaacactttatgcaagcaata 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gaattccacagcaacgaaagtcccgggaagagcgcgttgaaacactttatgcaagcaata 542

                                                                       
Query: 65  ttgccacagtacttaaagactactcgctctttttctgttaactcatcttagagttacaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ttgccacagtacttaaagactactcgctctttttctgttaactcatcttagagttacaat 482

                                                                       
Query: 125 gtgcctgctccatcttttcaatgtatagaaatagtgaatgtaggattagaacatatttaa 184
           ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct: 481 gtgcctgctccatcttttcaatgtatagagatagtgaatgtagaattagaacatatttaa 422

                                                                       
Query: 185 tatctaaccccacgaaaatcacgtctgtcttctgaacactgtaaagtccccatccaacta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tatctaaccccacgaaaatcacgtctgtcttctgaacactgtaaagtccccatccaacta 362

                                                                       
Query: 245 ccctaacatttgctgtgtctttggtgcaagaaaactatcctgccacgtgtgaagtttatc 304
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ccctaacatttgctgtgtcttaggtgcaagaaaactatcctgccacgtgtgaagtttatc 302

                                                                       
Query: 305 aattatgtagaatacacaccgaataacacttcatagttccatgctggtcgcttttgggtt 364
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 301 aattatgtagaatacacaccgaataacacttcatagctccatgctggtcgcttttgggtt 242

                                                
Query: 365 ttgttttggttttgtttatgttttatgagacagggtt 401
           |||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttgttttggttttgtttatgttttatgagacagggtt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space:   311649
Effective search space used:   311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no359_d17.g1 MSMg01no359_d17.g1 CHROMAT_FILE:
MSMg01no359_d17.g1 PHD_FILE: MSMg01no359_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:41 2005
         (376 letters)



>mm_chr2_71576101_71576876
          Length = 776

 Score =  727 bits (376), Expect = 0.0
 Identities = 376/376 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaaaaaaaagaatcgtaagttgaatctcttgttcagcagtatgaaaataagaagtaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaaaaaaaagaatcgtaagttgaatctcttgttcagcagtatgaaaataagaagtaaaa 260

                                                                       
Query: 61  gagacttctagacttcagaggcagtaaggtatgggaacacgggtgactgtcactgactgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagacttctagacttcagaggcagtaaggtatgggaacacgggtgactgtcactgactgg 320

                                                                       
Query: 121 tgtatgactattaaaatcccagtgtcttcagtaatatctctccagccttcctaaaaagat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtatgactattaaaatcccagtgtcttcagtaatatctctccagccttcctaaaaagat 380

                                                                       
Query: 181 cttagaaagaatacattcaacaaagcatatttacatttctgattatgaatgtttgtgaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttagaaagaatacattcaacaaagcatatttacatttctgattatgaatgtttgtgaca 440

                                                                       
Query: 241 aaaggaggggtttgtggcttcatgtaatcctgcagattttgccgctaatctccccttcat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaggaggggtttgtggcttcatgtaatcctgcagattttgccgctaatctccccttcat 500

                                                                       
Query: 301 tccttcgaattatctgtgccctgggtgtcctggtctctcgggcctatcttagccttgggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccttcgaattatctgtgccctgggtgtcctggtctctcgggcctatcttagccttgggt 560

                           
Query: 361 ggctcagcaagttacc 376
           ||||||||||||||||
Sbjct: 561 ggctcagcaagttacc 576


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space:   281489
Effective search space used:   281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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