BAC Information

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BAC

Clone NameMSMg01-359E16
Chromosome2 (Build37)
Map Location 24,648,747 - 24,649,172
singlet/doubletsinglet
Overlap geneEhmt1
Upstream geneHnmt, Tbpl2, Il1f8, LOC215253, Il1f9, Il1f6, LOC620156, Il1f5, Il1f10, Il1rn, Psd4, Pax8, LOC433410, LOC664938, Cacna1b
Downstream geneArrdc1, Zmynd19, Wdr85, Mrpl41, Pnpla7, Nelf, Entpd8, Noxa1, Nrarp, A830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1, Dpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887, B230208H17Rik, 4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5, LOC620709, Lcn10, Lcn13, Bmyc, LOC383678, Lcn3, Lcn11, LOC620858
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359E16.T7 (MSMg01no359_e16.b1)MSMg01-359E16.TJ (MSMg01no359_e16.g1)
ACCAG468740AG468741
length769829
length of high quality
(start - end)		430 (27 - 456)77 (55 - 131)
definitionCHROMAT_FILE: MSMg01no359_e16.b1 PHD_FILE: MSMg01no359_e16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:45 2005CHROMAT_FILE: MSMg01no359_e16.g1 PHD_FILE: MSMg01no359_e16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGGCAAAAGTCAAA
CCCAAACCAAGAAGGGAAAAGCCGGGGTCAGAGATGGGTATCTAACAACA
AGGTAACTTCCAGACTTGCAGGATATGAACATGGGTGAATGTACTCCAGC
AATATCCCTGAACAAGAGAGTTTATGAGAGAATTCACTAACAACCACTCA
GATCAAAGGCAGAGCAGCCCATGTCCTGCATCTGCCATAAAGACAGTAAG
AGATCGAAGAGATTTGGGTCTTATGGTTTGAGACTACTTCTGTGGTGACA
GCTTAGGAAACTATAGATCACCCTAGCCTATGAAGAAAACAACTCTAAGA
GCAGCCACTACACATGCTAAAGGTATTCAGAACTGTGGGATCCACAGGGA
ACGAATCCTTGGGCTTCTGGGTTGGGTGCCAAAGTCCAGACACTGAAATT
TCTGGCTGCCCCAGCCCATATTGTAAGGAGACATCAAGCTGACTGGAAGC
AGCAGTGTTGGACAGAGAGAGACCAGGCCTGTACCTGATTAACAGAATTC
GAATCTGAAGCCAGGCTAAAAAAAACAAAAGTATGGGTGGGTGCCGGGTA
AAATTGAATGTTAAAAGGAAAGCAAATTTTATAATACAATTGTGTCCCCC
GCAAGTTTGCCGTGGCCCTTTTTTTCTATGTTTCAAAGCCAAAGAGCGCA
ATTTTTACCTAACCCCCCCTGTTCTTCTTTTTTACTACCCACTATTTTTT
TGAACACCGCTGTACCCTC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXAATTTGGGTCCTCTGGAAGAGCAGCCAGTGCTCTTAACTGCTAAGC
CATGTCTCCAACCTCAGGTTTATTTTCTGTGTGTGTGTGTATGTCTCTGT
CTCCCTCCCNCCAATCCCCCCCCAATCCCCTACCCCCAACCCAACACCCC
CCCACACCAATAAATACACTCAAACCACAAACCCAACAACCCAAACCCCA
CACCCACCCAAAAACCCCACACCATACCCCCCCCCACTCCCCCCCTTCCA
CCCAACCTACCACTCACCCATCTCCTACCCACAACACCCAATCCCCCATA
TACAACATACCCACCCACAAAAAACAATATCACACACACATACCCAAACA
ACTCCCCCCCCACCCATTTTCCACAACCACCCCACCATTCCAACCCACAA
TTATTACTCCACCACACCAACCACAAAAAAACCCTCCACTACACACATCA
ACCAAACCATACACCCACCAAAACCACAAAATCACAAACCCCCCAACCCA
AAACAACAAAAAATTTCCTATAACACCACCCCCTACCACACAAACAACCC
TACACATAACCATCACCCAAAAACCCCTAACCCCTCCACACCACAACTAA
AACCATCCCCATCTTACCCACACCTCAAACCACAAATCAATCAACAATCC
CACCAAACCCACAAACATAACACCCCCCCACAAAACCCCCCATAAACACA
ACACCCTCATCAACCACCCCACACATACCACCACCAATATAACCCCTCCT
CCCACAACTAAAACCCCCTACACCACATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_e16.b1 MSMg01no359_e16.b1 CHROMAT_FILE:
MSMg01no359_e16.b1 PHD_FILE: MSMg01no359_e16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:45 2005
         (430 letters)



>mm_chr2_24648543_24649372
          Length = 830

 Score =  793 bits (410), Expect = 0.0
 Identities = 422/426 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaggcaaaagtcaaacccaaaccaagaagggaaaagccggggtcagagatgggta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaggcaaaagtcaaacccaaaccaagaagggaaaagccggggtcagagatgggta 264

                                                                       
Query: 65  tctaacaacaaggtaacttccagacttgcaggatatgaacatgggtgaatgtactccagc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctaacaacaaggtaacttccagacttgcaggatatgaacatgggtgaatgtactccagc 324

                                                                       
Query: 125 aatatccctgaacaagagagtttatgagagaattcactaacaaccactcagatcaaaggc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatatccctgaacaagagagtttatgagagaattcactaacaaccactcagatcaaaggc 384

                                                                       
Query: 185 agagcagcccatgtcctgcatctgccataaagacagtaagagatcgaagagatttgggtc 244
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agagcaacccatgtcctgcatctgccataaagacagtaagagatcgaagagatttgggtc 444

                                                                       
Query: 245 ttatggtttgagactacttctgtggtgacagcttaggaaactatagatcaccctagccta 304
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 445 ttatggtttgagactacttctgtggtgacagcttaggaaactatagattaccctagccta 504

                                                                       
Query: 305 tgaagaaaacaactctaagagcagccactacacatgctaaaggtattcagaactgtggga 364
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 505 tgaagaaaacaactctaagagcagccactacacatgctaaaggtactcagaactgtggga 564

                                                                       
Query: 365 tccacagggaacgaatccttgggcttctgggttgggtgccaaagtccagacactgaaatt 424
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttcacagggaacgaatccttgggcttctgggttgggtgccaaagtccagacactgaaatt 624

                 
Query: 425 tctggc 430
           ||||||
Sbjct: 625 tctggc 630


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space:   345641
Effective search space used:   345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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