BAC Information

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BAC

Clone NameMSMg01-359F07
Chromosome2 (Build37)
Map Location 16,620,988 - 16,621,371
singlet/doubletsinglet
Overlap genePlxdc2
Upstream geneLOC625457
Downstream gene4930515L03Rik, LOC383665, Nebl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359F07.T7 (MSMg01no359_f07.b1)MSMg01-359F07.TJ (MSMg01no359_f07.g1)
ACCAG468770AG468771
length778758
length of high quality
(start - end)
381 (32 - 412)451 (59 - 509)
definitionCHROMAT_FILE: MSMg01no359_f07.b1 PHD_FILE: MSMg01no359_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:48 2005CHROMAT_FILE: MSMg01no359_f07.g1 PHD_FILE: MSMg01no359_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAATTTTTC
ATAATACAATAGAATATTTTTAAAGAAGGAAACAAAAATGTTCATAAGAC
AAATTCTAGCCCATGCCCTTTATTTTCATTGTCTTCTCCAGCTGTCCAGT
ATAACCCAGTCTCTCCTAATCTGACCTCATTTTCCATAAATGACAGGCAC
CTTGACGCAGGTCCTCATGATTGATTGGAAAGCCCTTAATCCACTGAGTC
ATCTCCTGGTCCTAGTAGCGGCCATTTTGAAAGCAAATCTTACTTGCTTT
ATCATTCTGTTTTCCTGCCCTCTATAAGCCACAGAAAATTACTAGGAAAT
GAATTGTGAGTAGGTAAACAAGCGAGTTCCTTAATTGACTTCACATAGAA
CTTAATTTCACACAATATAACTCCAGGATTGCTTANTAAATCAAANNGAG
GGTGTGTCTGAATTTTTGCTAGTAATTTTACAAATGTCAAGATTAACTTT
TCTAGAAACTATCCTGTGANCAGGTGGGAAATTAATAATGTTTTATTGTA
AAATTGGGAAACCCCTTAAACCTTTAATTAAAGGAAGGAAAAAGGTAATT
TCAAATATCCATTCCGGGATTAAAAAGAAACATGGACTCTCCTTTTTTTG
GGAAAACGGGTGAAATTTCCCCCCCCAGGTTATACCCTTCTTTTTTTTTT
TTTTTTTGGGGGGAAGAGAGAAATTTTTTCTTTTTCCCGATCCCTTTCCC
CCTTTCGGTTTTTTGGAGAAATATTGTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCAATTCTCCTCAAGCTATTTCACAAAATGGAAACAAAAGTGC
TCTACCCAATTCATTCTACAAAGCCACAATTACTCTTATACCTAAGCCAC
ATAAAAACCCAACAAAAATAGAGAACTTCAGACCAATTTCCCTTATGAAT
ATTGATGCAAAAATACTCAATAAAATTCTCGAACACCAAATCCAAGGAAA
CAACAAAAAGATCATCCATGAAGTAGGTTTCATTCCAGGGATGAAGAGAT
GGTTTAATATATGGAAATCCATCAACGTAATCCACTGTATAAACAAACTC
AAAGACCAAAACCACATGATGATCTCTTTAGATACTGAGAAAGCATTTGA
CAAAATCCAGCACATACTCATAATAAAAATCTTGGAAAGATCAGGAATTC
AAGGTGCATACCTAAACATAATAAAAGCAATATATAGCAAACCAGTAGCC
AACAGCAAAGTAAATGGAGAGAAGCTTGAAGCAATCTCACTCAAATCAGG
GACTAGACAAGGCTGTCCACTTTTTCCCTACCTATTCAATATAGAACTCG
AAGGCCTAACTAGAGGCATTAGACAAAAAAGAGGACAAGGGCATACAAAT
GGGAAGGGAAAACTCCCAAAAATCCTAATTGCCGAAGGAAGGGAGGGAGT
TTTAAGGGGCCCCCNAAAATTTATCCAAAAACCCCTAACCGGGGAAAAAA
ATTTGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_f07.b1 MSMg01no359_f07.b1 CHROMAT_FILE:
MSMg01no359_f07.b1 PHD_FILE: MSMg01no359_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:48 2005
         (381 letters)



>mm_chr2_16620791_16621571
          Length = 781

 Score =  696 bits (360), Expect = 0.0
 Identities = 375/384 (97%), Gaps = 7/384 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaatttttcataatacaatagaatatttttaaagaaggaaacaaaaatgttcat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 gaattccaatttttcataatacaatagaatatttttaaagaaggaaacaaaaatgttcat 257

                                                                       
Query: 65  aagacaaattctagcccatgccctttattttcattgtcttctccagctgtcca------- 117
           |||||||||||||||||||||||||||||||||||||||||||||||||||||       
Sbjct: 258 aagacaaattctagcccatgccctttattttcattgtcttctccagctgtccataggcca 317

                                                                       
Query: 118 gtataacccagtctctcctaatctgacctcattttccataaatgacaggcaccttgacgc 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gtataacccagtctctcctaatctgacctcattttccataaatgacaggcaccttgacgc 377

                                                                       
Query: 178 aggtcctcatgattgattggaaagcccttaatccactgagtcatctcctggtcctagtag 237
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 378 aggtcctcatgattgattggaaagcccttaacccactgagtcatctcctggtcctagtag 437

                                                                       
Query: 238 cggccattttgaaagcaaatcttacttgctttatcattctgttttcctgccctctataag 297
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 cgcccattttgaaagcaaatcttacttgctttatcattctgttttcctgccctctataag 497

                                                                       
Query: 298 ccacagaaaattactaggaaatgaattgtgagtaggtaaacaagcgagttccttaattga 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ccacagaaaattactaggaaatgaattgtgagtaggtaaacaagcgagttccttaattga 557

                                   
Query: 358 cttcacatagaacttaatttcaca 381
           ||||||||||||||||||||||||
Sbjct: 558 cttcacatagaacttaatttcaca 581


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)