BAC Information

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BAC

Clone NameMSMg01-359F22
Chromosome2 (Build37)
Map Location 110,878,462 - 110,878,906
singlet/doubletsinglet
Overlap geneLOC668802
Upstream geneCcdc34, LOC668797, Bbox1, 1110018M03Rik, LOC668799, Slc5a12, Muc15
Downstream geneLOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309, LOC433463, Olfr1310, Olfr1311
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359F22.T7 (MSMg01no359_f22.b1)MSMg01-359F22.TJ (MSMg01no359_f22.g1)
ACCAG468800AG468801
length779748
length of high quality
(start - end)		415 (26 - 440)444 (54 - 497)
definitionCHROMAT_FILE: MSMg01no359_f22.b1 PHD_FILE: MSMg01no359_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:51 2005CHROMAT_FILE: MSMg01no359_f22.g1 PHD_FILE: MSMg01no359_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTAAAAATTGTGATA
AGGATACTGAAATGCAGCTCTCCACAGCTAATAGCTTCTGGAGGGGATAC
CAGTGGGAAAGGATTCAGTTTTCTTTAAGGGGCTAGTTACCCACTGGGAG
TTTGACCATGCTCCAATGAGTACATGGCCAACATGAACTGGAATTCTTTT
TCTTTCTCCTCCTCGTCCTCGTCCTCCTCCTCCTTATCTTCTGTGGGTTG
GTAATAAGATATGGAGGGATGAACATGGGAGTCCTGGAAAGTGAATGTGA
TCATGGTTCATGGTGTGAAATTCCCAAATAATCAATTAAAACATTATGAA
AAAGTAAGCATTGTGTTAGAGTCCCTTCTTCTTCATAACAGCAGCATCTA
CTGTTGTTTCTTTTCTTGTTGCTGCTATTTGGCAGGAGAGGGATAGAATC
TTGCTGAATTTTTGATTTTCATTTCTTTGAAAGCCATGCATTACCCATCT
ATATTCTACCTACCTTGGTTATTTTTGTTCTAAAGGACCAAGGCAGTTTT
GCTATGGATGAACCCCCTATGATATTTGCCCCCCTTCAAGGGTTAAATTT
AACAGAGGCAAGAACATTTCCTTGGGTTTCTTTTTTTAGGGGAATCAAAT
ACCCCATACCCAAATGGTGGTCCTTTCTGGTTTCCCCTTTCCCCACACCT
CAATTATAACCTCCCACCCTAATTTTTAAAAAAGCCCCCCTAATTTCTTC
CCTCTCCTTTCTCGCCTCTTTTACACTCG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXAAAAGCACATCTTTTATAGAAGTTGACATATAAGTGAATGTTAATCT
TGATTGCCAACTTGGTTAGACTGAAAAATTACTGAGATATCACTAAAGCA
CATCTCTTGGAATGTCTTTATGATTATCTCAAGAGAAAAGCTTTCATCTA
TAACTGGATTAACAACTTGATGAAATCTTGGGATGATATTATTGGAAGAT
GGAGTATCAAAGAAGCATGACCTAGCTAGAGGCTATAGGTATTGGGCTAT
TTCTGTTTCTACGATGCTGTTCTGCTAAATTTACTCTCTTGAACATACTG
TCTGCTCCCTGTCTGTTATGCCTGTTTTTAACCATGTGTTAAACACCTAA
CCACAATGTTTACATCTGCTGGCATAATGCCCTGCCTAGCATAAACGACA
ATCACTGTAGACAACGATCACAGACTGAAATCTATGAAGTATTTCTGGAT
AATAAATCCTTTCAAAAGCTGTTTCTGTCAAGTTATTGTTTATCACCACT
ACGAAATACCCCGTACTCATTATGTATCTTATTCCTGCTATCACAAAAAT
ATGCTATTACTTTTTTAAAAACCAAACTAACCCTTTATATTTTCTGAATT
TATGTCCCACCTTTTGCATTTCCCCCCTTAAGAAATCTTCACTATTTTGG
TATTTTTCCCCCGCTTTTCTCTTCTCCCCCCTATTTTTTTCCCTCTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_f22.g1 MSMg01no359_f22.g1 CHROMAT_FILE:
MSMg01no359_f22.g1 PHD_FILE: MSMg01no359_f22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:51 2005
         (444 letters)



>mm_chr2_110878262_110879106
          Length = 845

 Score =  814 bits (421), Expect = 0.0
 Identities = 439/445 (98%), Gaps = 1/445 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaagcacatcttttatagaagttgacatataa-gtgaatgttaatcttgattgccaact 59
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 645 aaaagcacatcttttatagaagttgacatataatgtgaatgttaatcttgattgccaact 586

                                                                       
Query: 60  tggttagactgaaaaattactgagatatcactaaagcacatctcttggaatgtctttatg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tggttagactgaaaaattactgagatatcactaaagcacatctcttggaatgtctttatg 526

                                                                       
Query: 120 attatctcaagagaaaagctttcatctataactggattaacaacttgatgaaatcttggg 179
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 525 attatctcaagagaaaagctttcatctataactggattaataacttgatgaaatcttggg 466

                                                                       
Query: 180 atgatattattggaagatggagtatcaaagaagcatgacctagctagaggctataggtat 239
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 465 atgatattattggaagatggaggatcaaagaagcatgacctagctagaggctataggtat 406

                                                                       
Query: 240 tgggctatttctgtttctacgatgctgttctgctaaatttactctcttgaacatactgtc 299
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tgggctatttctttttctacgatgctgttctgctaaatttactctcttgaacatactgtc 346

                                                                       
Query: 300 tgctccctgtctgttatgcctgtttttaaccatgtgttaaacacctaaccacaatgttta 359
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 345 tgctccctgtctgttatgcctgtttttaaccatgtgttaaacacctaaccacaatgttaa 286

                                                                       
Query: 360 catctgctggcataatgccctgcctagcataaacgacaatcactgtagacaacgatcaca 419
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 285 catctgctggcataatgccctgcctagtataaacgacaatcactgtagacaacgatcaca 226

                                    
Query: 420 gactgaaatctatgaagtatttctg 444
           |||||||||||||||||||||||||
Sbjct: 225 gactgaaatctatgaagtatttctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 845
Length adjustment: 10
Effective length of query: 434
Effective length of database: 835
Effective search space:   362390
Effective search space used:   362390
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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