BAC Information

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BAC

Clone NameMSMg01-359G01
Chromosome2 (Build37)
Map Location 128,198,395 - 128,391,683
singlet/doubletdoublet
Overlap geneLOC100043424, LOC100043729, LOC383791
Upstream geneA530057A03Rik, Fahd2a, Kcnip3, Prom2, Zfp661, Mrps5, Mal, LOC668892, Mall, Nphp1, 1500011K16Rik, Bub1, Acoxl, Bcl2l11
Downstream geneLOC100043730, Gm355, Anapc1, Mertk, Tmem87b, 1600015H20Rik, Zc3h8, LOC100043735, LOC100043736, Zc3h6, LOC668894, Ttl, LOC100043738, Rpo1-2, Chchd5, LOC545461, LOC100043431, Slc20a1, A730036I17Rik, LOC671466, Ckap2l, Il1a, Il1b, OTTMUSG00000015529, LOC668896, F830045P16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359G01.T7 (MSMg01no359_g01.b1)MSMg01-359G01.TJ (MSMg01no359_g01.g1)
ACCAG468806AG468807
length728753
length of high quality
(start - end)
470 (32 - 501)245 (62 - 306)
definitionCHROMAT_FILE: MSMg01no359_g01.b1 PHD_FILE: MSMg01no359_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:51 2005CHROMAT_FILE: MSMg01no359_g01.g1 PHD_FILE: MSMg01no359_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(128,198,395 - 128,198,860)(128,391,439 - 128,391,683)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCACTGTTTT
GTTTGGGGTCACCCTGTTGTGACTTCCCCATGGGGTCTGATGCCCAGTAA
GCTATGAGATTCTACTTCTGTGTTCTTGATTTTTACTAGAGACTCACACA
AGACTTAGAAGACACCCCAGGTGATGTCTTGAGCTCCTGCCTCCAAGGAC
CCAAAGCAACTTCAAGTCAAGTCCACTGGGAACTCCAATTCACAAGGTGC
AGAGCCCCTCAACACCTCTCCTGTCTGAGACTCTAAAGATAACTGTGGGC
TTACTTGAATTTGCTCCAAGTAGCCTCTATAGGAGAGAAGGAGAAAAAAT
AATAATAAGACAAGCCCCTCCACACACACAACCAAGCAGAGGTTGCAAGG
ACAGTATATGGCTGACAGAAGTTCCAGAAAGACTGTAGTTCTATTCATAA
CTGCACTGCTGCTCAAGGCCCCTGTGGTCAGCCTCCCTTGGTGCACCCCT
GTCTGCATATCACATTCTCAGCTCTTCAAAACAAGTGAAAGGATATTTCT
CAAGGCTTAGCAGGTATATAGAGTTATATGTTGCCCTTCTTCCCCATTTT
ATGCTGTTAATTCATAGAACTTCGTCCGTTTTCCGATATTGTCTTTATTT
TTCCCCATCCACTTTTTAATCTTTTTCCATTCTTCTCACATTCCCTTGTT
TAAATTTTCTTTCTTCCATGCTCTTTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTGCTCTAGACGCAGCTGCTCCCAGGAGCTTCAGCTCTG
GTTTTGTTATGTAGCTCATCTTTATAGAGGCGTGGAGTTGAGTTGTCTGC
TAATCTGTGCTTTGGTTACTGGCTTTTTTTGGACATGAAGTTATAACTTG
CTAGAAGCTACCCAAGTTGTTAGCAAGGAGCCTAGGGCACGCTCATAAAG
AGGCCCTGCAAGCTGGCAATAAGGGAAATGTACAATTGCAGGAAGCTGTT
GGAGCCATGTGTCGAGCATTGCCCAGGGGCTCCACGCAGGAACTCTTTAA
ACCTCCGAGTACAGAATCATCGTTGCATATGCTGTGTGCTGGTAATTACT
ACGCGGACCTGCCTGAAGTTGGTTTCAATTTCTGTCTCTCTTACCTTTGT
CCCTCGTTTACTACTACTTTACTACTTTGAATCCGCCTTAACTGTTTTTT
CACCTTCTTCTTGTCCTCTTTTTCCTGCTTTTTTCCCCTGCTGTCTGCTA
CCCTTAATTCTTACTCTCCTTTTCTTTTTTTTTCCCCTTTTTTTTTTTTT
TTTCCCCCCCCCCCTCCCTTTTTCCCCCCTCCTTTTTTCTTCTACTTCCT
CCCTTACCTCTTCCCTTCTCACTTCCACTTCCCGTTTTCCATTCCTTCCT
TCCTCCTTCCTCCCCTTTTTCCCCCCCCCCTCTTCCTCTTTTTCACTTTT
TTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_g01.b1 MSMg01no359_g01.b1 CHROMAT_FILE:
MSMg01no359_g01.b1 PHD_FILE: MSMg01no359_g01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:51 2005
         (470 letters)



>mm_chr2_128198191_128199060
          Length = 870

 Score =  878 bits (454), Expect = 0.0
 Identities = 463/466 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccactgttttgtttggggtcaccctgttgtgacttccccatggggtctgatgccc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccactgttttgtttggggtcaccctgttgtgacttccccatggggtctgatgccc 264

                                                                       
Query: 65  agtaagctatgagattctacttctgtgttcttgatttttactagagactcacacaagact 124
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 265 agtaagctatgagattctacttctgtgttcttgatttttactagagactcccacaagact 324

                                                                       
Query: 125 tagaagacaccccaggtgatgtcttgagctcctgcctccaaggacccaaagcaacttcaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tagaagacaccccaggtgatgtcttgagctcctgcctccaaggacccaaagcaacttcaa 384

                                                                       
Query: 185 gtcaagtccactgggaactccaattcacaaggtgcagagcccctcaacacctctcctgtc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 385 gtcaagtccactgggaactccaattcacaaggtgcagagcccctcaacacctctcctatc 444

                                                                       
Query: 245 tgagactctaaagataactgtgggcttacttgaatttgctccaagtagcctctataggag 304
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 445 tgagactctaaagataactgtgggcttacttgaatttgttccaagtagcctctataggag 504

                                                                       
Query: 305 agaaggagaaaaaataataataagacaagcccctccacacacacaaccaagcagaggttg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agaaggagaaaaaataataataagacaagcccctccacacacacaaccaagcagaggttg 564

                                                                       
Query: 365 caaggacagtatatggctgacagaagttccagaaagactgtagttctattcataactgca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 caaggacagtatatggctgacagaagttccagaaagactgtagttctattcataactgca 624

                                                         
Query: 425 ctgctgctcaaggcccctgtggtcagcctcccttggtgcacccctg 470
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctgctgctcaaggcccctgtggtcagcctcccttggtgcacccctg 670


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no359_g01.g1 MSMg01no359_g01.g1 CHROMAT_FILE:
MSMg01no359_g01.g1 PHD_FILE: MSMg01no359_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:51 2005
         (245 letters)



>mm_chr2_128391239_128391883
          Length = 645

 Score =  435 bits (225), Expect = e-126
 Identities = 240/245 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgctctagacgcagctgctcccaggagcttcagctctggttttgttatgtagctcatct 60
           ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct: 445 ttgctctagacgcagctcctcccaggagtttcagctctggttttgttatgtagctcatct 386

                                                                       
Query: 61  ttatagaggcgtggagttgagttgtctgctaatctgtgctttggttactggctttttttg 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 385 ttatagaggcgtggagttgagttgtttgctaatctgtgctttggttactagctttttttg 326

                                                                       
Query: 121 gacatgaagttataacttgctagaagctacccaagttgttagcaaggagcctagggcacg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gacatgaagttataacttgctagaagctacccaagttgttagcaaggagcctagggcacg 266

                                                                       
Query: 181 ctcataaagaggccctgcaagctggcaataagggaaatgtacaattgcaggaagctgttg 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctcagaaagaggccctgcaagctggcaataagggaaatgtacaattgcaggaagctgttg 206

                
Query: 241 gagcc 245
           |||||
Sbjct: 205 gagcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)