BAC Information

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BAC

Clone NameMSMg01-359H19
Chromosome2 (Build37)
Map Location 71,996,793 - 71,997,217
singlet/doubletsinglet
Overlap geneRapgef4
Upstream geneDync1i2, Slc25a12, LOC667528, Hat1, LOC100040177, Metapl1, LOC100040207, Dlx1, Dlx1as, Dlx2, Gm1631, Itga6, Pdk1, LOC100040270
Downstream geneB230120H23Rik, Cdca7, LOC383712, LOC635960, LOC100039928, 6430710C18Rik, Sp3, Hspe1-ps5, Gtpbp9, LOC620110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359H19.T7 (MSMg01no359_h19.b1)MSMg01-359H19.TJ (MSMg01no359_h19.g1)
ACCAG468890AG468891
length762881
length of high quality
(start - end)		430 (25 - 454)79 (55 - 133)
definitionCHROMAT_FILE: MSMg01no359_h19.b1 PHD_FILE: MSMg01no359_h19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:59 2005CHROMAT_FILE: MSMg01no359_h19.g1 PHD_FILE: MSMg01no359_h19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTGTACAGGTGAGAG
ACACTCTACAGTAAAGTAGGCATTGGGGTTTTGGTTTCACATCTGGGGTC
CCCGTGACCCCAAAGGAGGGCAGCAGCTGTTCTACAGCTCAGCAGGTAGT
AGTCTGGGACCTAACGTTCCTTTGGGGAGTGTCTTGAAGGAGAAGAGCAT
GCACGGATGCTTCTGTGCATGAAAAGCATCCCTCGCTGTGACACTACCAG
CATGCATCACAGAAGGAGGTACAAGATGCTAGACTAGAGGCAGCCTGGTG
GACCACATGGCATTTTCAGAAATATTTATTTACTCGGTGCTGCTGGTGAC
GTTTAAAAGTGCTCACGGCAAACATCTAGTACCTCCTGCTTAAAGCACAA
GTACTTCTCTCAAGGGCAATAGACACATGGAAAACAACGTGAAGGGGGTC
TAAAAGTCAGCTTGTAATTAAATGCTTCCCAATGCTGCATTGTCACTGGC
TGTATCCTGGCTAGCGCACATTTTCTACCAGGCCTTACCGTTTATAAGGG
GCTATTTTCATTAATTAGTTTTTGTACCCTATTTTGCCCCTTTTCTCGCC
GGGGCTTTTTTTTGACCCCTTCCTTTCCCCTTCCAATTTAACACCCATGT
GATCCCCCCCCATTTAAAATACACCTTCACTTTCTACTTTTTTTTTTTCT
TCCCTTTCTTTTTTCCCTTTTCTCCCCCTTTTCTTCTCCCCTTTTTCCCC
CCCCTTCTTTTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTGATTATCTTTTAAAAATTACACTTGTTTATTTATTGTGTGATCG
TGTGTGTGTGTGTGTGCTTGTGCGTGTGCATGCACACATGCGAACACCCG
TGTTTATGTGTGCTGTAGCTCATGATTGGAGATCAGAGGACAACTGCTGG
CAATCTGTTCTCTCCCATCTGTGGGTACAGGGGACTAGACTCAGGTCTTC
ACGCTGGCTTATACCCTCTTCTCCCTATTGATCCATTTACCCACCCCCGG
TTTATCTTTTATACCCTATTCATTCACCTCTCCATTATTCCCTATTATTC
ACCTCTTTTTCCCCTGCCCTCCCCTTTATTTTTCCCGCCCTTTTTTTCCC
CTTTCCCCTCCTTCCCCTTCCCTTTTTTTTCCCCTTTTTTCTTTCCCCCT
TCTCTCCCTCTCCCTTTTTTCTTTTTTCTTCTCTTCCCCCCTTTTTCCCT
TCTTTCCTTCCATTCTTTCCCTTTATCCATCCCCCCCTCTCTTTTCATAC
CCATATGGCTTCTTATTTCCCCCTATTTTCTCCTCCCTTCCTTTTTCTTT
CCCTTCCCTTTTTTTCCTCCCCCTTTTTCATTCTCCTATTTATTCTCTTT
CTCCCCCCCCATTTCCCCCTCTCTCCCTTCTCTATCTTTTTCTATTTTAC
CCCCTCTCATTTTTTCTTTACCATATCCATATGTCCCCCCCTTTCCCCCC
CTTCATTCTTTATATTATTTTTTCTATCCCCCCTTTGCCCATTCTTTTTT
ATTATTCCTACCTCCTTTCTCCTCTTTCTTATTTCTTCCTTCTTAATCTC
TCTATTCTCCTTATCCTTTTCTCTCTCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_h19.b1 MSMg01no359_h19.b1 CHROMAT_FILE:
MSMg01no359_h19.b1 PHD_FILE: MSMg01no359_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:59 2005
         (430 letters)



>mm_chr2_71996589_71997417
          Length = 829

 Score =  793 bits (410), Expect = 0.0
 Identities = 422/426 (99%), Gaps = 1/426 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtgtacaggtgagagacactctacagtaaagtaggcattggggttttggtttc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 gaattcagtgtacaggtgagagacactctacagtaaagtaggcattggggttttggtttc 570

                                                                       
Query: 65  acatctggggtccccgtgaccccaaaggagggcagcagctgttctacagctcagcaggta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 acatctggggtccccgtgaccccaaaggagggcagcagctgttctacagctcagcaggta 510

                                                                       
Query: 125 gtagtctgggacctaacgttcctttggggagtgtcttgaaggagaagagcatgcacggat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gtagtctgggacctaacgttcctttggggagtgtcttgaaggagaagagcatgcacggat 450

                                                                       
Query: 185 gcttctgtgcatgaaaagcatccctcgctgtgacactaccagcatgcatcacagaaggag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gcttctgtgcatgaaaagcatccctcgctgtgacactaccagcatgcatcacagaaggag 390

                                                                       
Query: 245 gtacaagatgctagactagaggcagcctggtggaccacatggcattttcagaaatattta 304
           |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 389 gtacaagatgctagactaga-gcagcctggcggaccacatggcattttcagaaatattta 331

                                                                       
Query: 305 tttactcggtgctgctggtgacgtttaaaagtgctcacggcaaacatctagtacctcctg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tttactcggtgctgctggtgacgtttaaaagtgctcacggcaaacatctagtacctcctg 271

                                                                       
Query: 365 cttaaagcacaagtacttctctcaagggcaatagacacatggaaaacaacgtgaaggggg 424
           ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct: 270 cttaaagcacaagtacttctctcaagggcaatagacatatggaaaacaacgtgaagggtg 211

                 
Query: 425 tctaaa 430
           ||||||
Sbjct: 210 tctaaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 829
Length adjustment: 9
Effective length of query: 421
Effective length of database: 820
Effective search space:   345220
Effective search space used:   345220
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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