Query= MSMg01no359_i20.b1 MSMg01no359_i20.b1 CHROMAT_FILE:
MSMg01no359_i20.b1 PHD_FILE: MSMg01no359_i20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:04 2005
(458 letters)
>mm_chr2_59113087_59113945
Length = 859
Score = 864 bits (447), Expect = 0.0
Identities = 453/455 (99%), Gaps = 1/455 (0%)
Strand = Plus / Plus
Query: 5 gaattcactgtttcttagagtgagcatttacacatgttaaatgagtgacatagctgtgag 64
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactgtttcttagaatgagcatttacacatgttaaatgagtgacatagctgtgag 264
Query: 65 gaccacatatacagactgtttatagttagcagcatcatttcagattattctaagcccttg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaccacatatacagactgtttatagttagcagcatcatttcagattattctaagcccttg 324
Query: 125 attaaatatgaaaacagcccagctgtattaattttttctaattaatgagtaaaatccttt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 attaaatatgaaaacagcccagctgtattaattttttctaattaatgagtaaaatccttt 384
Query: 185 taaaacttcagaagcccatgcatgtaaaataagtaaaatgtgggttccatgccgttacct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 taaaacttcagaagcccatgcatgtaaaataagtaaaatgtgggttccatgccgttacct 444
Query: 245 aattcaagaaacttttaattcaggtaacattatttcatttctgcagttttcatagtttat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aattcaagaaacttttaattcaggtaacattatttcatttctgcagttttcatagtttat 504
Query: 305 agtctataattactagtcataaattatttaacattaataagttattgaaccaaactaata 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 agtctataattactagtcataaattatttaacattaataagttattgaaccaaactaata 564
Query: 365 attacattgttagccttgcctctgagtcattaggttttttt-aaaactatctgtatatat 423
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 565 attacattgttagccttgcctctgagtcattaggttttttttaaaactatctgtatatat 624
Query: 424 ttttaaagtgtgatatatatatcactttgaagttg 458
|||||||||||||||||||||||||||||||||||
Sbjct: 625 ttttaaagtgtgatatatatatcactttgaagttg 659
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 859
Length adjustment: 10
Effective length of query: 448
Effective length of database: 849
Effective search space: 380352
Effective search space used: 380352
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no359_i20.g1 MSMg01no359_i20.g1 CHROMAT_FILE:
MSMg01no359_i20.g1 PHD_FILE: MSMg01no359_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:04 2005
(436 letters)
>mm_chr2_59316053_59316889
Length = 837
Score = 746 bits (386), Expect = 0.0
Identities = 407/414 (98%), Gaps = 2/414 (0%)
Strand = Plus / Minus
Query: 24 acttcttttatttccacagcactccctgccccatgcacacacactctttttttgtttgag 83
|||||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 837 acttcttttattcccacagcactccctgccccacgcacacacactc-ttttttgtttgag 779
Query: 84 acaggagacagagccctactctgtagctcatgctagtatggaactcattttatagcccag 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 acaggagacagagccctactctgtagctcatgctagtatggaactcattttatagcccag 719
Query: 144 gctagcatcaactatgtggcaatccctctgcctcagcctccccggtactggaattataag 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 gctagcatcaactatgtggcaatccctctgcctcagcctccccggtactggaattataag 659
Query: 204 gcacaagccacacacccagttgaatttctagtactcttaaacaaaacaaacaaattatct 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 gcacaagccacacacccagttgaatttctagtactcttaaacaaaacaaacaaattatct 599
Query: 264 ttttctccattcactggacctgaatcaaaaggccactgttaatatggacatgtatgtact 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttttctccattcactggacctgaatcaaaaggccactgttaatatggacatgtatgtact 539
Query: 324 gatcttccctctcagtcatcacaccatcagaaactctgcatacaagggatttcccctgcc 383
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gatcttccgtctcagtcaccacaccatcagaaactctgcatacaagggatttcccctgcc 479
Query: 384 attaagcacatctcaactctgtgcaggaaagacatatgttataaa-ttagccaa 436
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 478 attaagcacatctcaactttgtgcaggaaagacatatgttataaagttagccaa 425
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 837
Length adjustment: 9
Effective length of query: 427
Effective length of database: 828
Effective search space: 353556
Effective search space used: 353556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
