BAC Information

Click to search

BAC

Clone NameMSMg01-359K03
Chromosome2 (Build37)
Map Location 4,884,577 - 4,885,054
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040163, LOC666944, 1700080N15Rik, Frmd4a, EG634452, Prpf18, LOC623483, E130319B15Rik, LOC666973, Sephs1, Phyh, LOC381346, LOC100040250, LOC100040426
Downstream gene1110017I16Rik, Mcm10, Optn, Ccdc3, LOC100040292, Camk1d, LOC666599, Cdc123, Nudt5, Sec61a2, Dhtkd1, Upf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359K03.T7 (MSMg01no359_k03.b1)MSMg01-359K03.TJ (MSMg01no359_k03.g1)
ACCAG469001AG469002
length754734
length of high quality
(start - end)
411 (33 - 443)478 (61 - 538)
definitionCHROMAT_FILE: MSMg01no359_k03.b1 PHD_FILE: MSMg01no359_k03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:09 2005CHROMAT_FILE: MSMg01no359_k03.g1 PHD_FILE: MSMg01no359_k03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGTTTA
CCTCTGTACCCCATTTTTGAATAGGGTTATTTGGTTTTCTGGAGTCCAAC
TTCTTGAGTTCTTTATATATATTGGGTATTAGCCCCCTATCAGATTTTGG
ATTGGTAAAGATCTTTTCCCAATCTGTTGGTTGACTTTTTTTTTTTTTGT
CTTATTGACAGTGTCCTTTGTCTTACAGAAGCTTTGCAATTTTATGAGGT
TCCATTTGTTGATTCTTGATCTTACAAGCACAAGCGACTGCTGTTCTGTT
CAGGATTTTTTCCCCTGTGCCCATATCATTGAGGCTTTTCCCCACTTTCT
CCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTGATCCAC
TTACACTTGAGCTTTGTACAAGGAGAGTCTATATTTTTTTATCGGGGAAT
TGAGTCCATTGATATTAAGAGATGCTAGGGAAAAGTAATTGCTGTTTCCT
GCTATTTCTCGTTGTATATCTACCACTCTCCTCCCGCATTTTTTTCTTTC
TCACTTTGTTTAACGATTTATTTTCACTTTTTTTCTTCCCCCTTTTTTTC
CCCCTTTTTATTCCGTCTCCCCCTCTTTTTTCTTTCCCTTTTTCCCTATT
TCGTTTTGTTTTTTTTCCCCCTCACCCCTATCTTCCACTTTTNCCCCTTG
TTTTACTCTATCCTCTTTTACGCTCCCTTTTATATTCTCCACCTACTACC
ACTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXAGAGAAAAATTAAAAATACTTCCCAGGCATAGGACAGACA
TTTACCATCTAGAACCAAGCCTCTCTATAAGCACAAGCAATTTTCTGAAA
GGCTGGGCCAAGGGTCACCCTTCAGGTAATGGACTCTGGGTGATAAGGCC
TGAGATCAGCAGTAAAGGGCACTGAGACAGGACTCAGGCTAGTAGCTATT
GATGACAGATAGAGATTGAGAGTGGATGCAATATACATCGATCCTAGGGC
CTTGTGCATGCATCCTGATACATTCCTACAGGCCTATGTCCTCAGACCTT
TAAAAAATAATAATAAACAAGCTTGAGACAGACTCTTGTTAAGTTTCCCA
GCTGGGCCTGATTTTAGGATCCTCCGTCCATAGCCTCCCATGAGTTGTGG
CAGTTACTATGTGCAATCTTGCCAGGCCAGGAAGTGTCTTCATATTTGAG
TAACTTGTGTAGCTATAACAGTGCTTATGCCCTGTAATGGCTAGTTTGAT
TTGCCAACTTGAATCAATCTATAGTTACCTGGAAGACAGCCCCATTGAAA
TACTGTCTCGCACCACCTGCCCTGTGCCCTCGCTTTAACTTGACCATTTT
TTCGGCGCATCCGAACATCGATTTTCACTTTTCTTCCGTTCGTATCCTTC
CCCCTTTTTCCCCCCCTTCTCCTTTACCATTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_k03.g1 MSMg01no359_k03.g1 CHROMAT_FILE:
MSMg01no359_k03.g1 PHD_FILE: MSMg01no359_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:09 2005
         (478 letters)



>mm_chr2_4884377_4885254
          Length = 878

 Score =  901 bits (466), Expect = 0.0
 Identities = 475/478 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagaaaaattaaaaatacttcccaggcataggacagacatttaccatctagaaccaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagaaaaattaaaaatacttcccaggcataggacagacatttaccatctagaaccaagc 260

                                                                       
Query: 61  ctctctataagcacaagcaattttctgaaaggctgggccaagggtcacccttcaggtaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctctataagcacaagcaattttctgaaaggctgggccaagggtcacccttcaggtaat 320

                                                                       
Query: 121 ggactctgggtgataaggcctgagatcagcagtaaagggcactgagacaggactcaggct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggactctgggtgataaggcctgagatcagcagtaaagggcactgagacaggactcaggct 380

                                                                       
Query: 181 agtagctattgatgacagatagagattgagagtggatgcaatatacatcgatcctagggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtagctattgatgacagatagagattgagagtggatgcaatatacatcgatcctagggc 440

                                                                       
Query: 241 cttgtgcatgcatcctgatacattcctacaggcctatgtcctcagacctttaaaaaataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttgtgcatgcatcctgatacattcctacaggcctatgtcctcagacctttaaaaaataa 500

                                                                       
Query: 301 taataaacaagcttgagacagactcttgttaagtttcccagctgggcctgattttaggat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taataaacaagcttgagacagactcttgttaagtttcccagctgggcctgattttaggat 560

                                                                       
Query: 361 cctccgtccatagcctcccatgagttgtggcagttactatgtgcaatcttgccaggccag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctccgtccatagcctcccatgagttgtggcagttactatgtgcaatcttgccaggccag 620

                                                                     
Query: 421 gaagtgtcttcatatttgagtaacttgtgtagctataacagtgcttatgccctgtaat 478
           ||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 621 gaagtgtcttcttatttgagtaacttgtgtagctataacagtgcttatgttctgtaat 678


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)