BAC Information

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BAC

Clone NameMSMg01-359M11
Chromosome2 (Build37)
Map Location 36,056,921 - 36,057,416
singlet/doubletsinglet
Overlap genenone
Upstream geneGsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194, Dab2ip, Ttll11, Ndufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236, Mrrf
Downstream geneLOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362, Olfr364-ps1, Olfr365
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359M11.T7 (MSMg01no359_m11.b1)MSMg01-359M11.TJ (MSMg01no359_m11.g1)
ACCAG469112AG469113
length731732
length of high quality
(start - end)		534 (32 - 565)496 (60 - 555)
definitionCHROMAT_FILE: MSMg01no359_m11.b1 PHD_FILE: MSMg01no359_m11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:21 2005CHROMAT_FILE: MSMg01no359_m11.g1 PHD_FILE: MSMg01no359_m11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:54:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGCATCTTC
ATCTGAAGGCTGCTAGCAGAATATTGACTTCCAGGCAGCTAGGACGAGGG
TTTTAAAGTCCACACTCATAGGGACACACCTACTCCAACAGGGCCACACC
TTGTAATAGTTCCACTCCCTGGTCCGAGCATATACAAATCATCACACCAA
CCCCTAAGGTCTGGGACTACAGAGGTATGGCGGTTTGAATAAGAAATGTT
CATTCCCCACAGGCTCAGGCCTTTGAAGCCTAGCAGGTGGTGCTGTGTGG
AGAGGTTATGAGGAGTGCAGCCCTGTTGGGAGAAGTACATCACTGAGTTT
CAGGCTTTAAGAGTTTAGATCCTCACACCCCTTCCAGTCCACTCTCTACT
TCCTGCATGAGTTTGAGGATGTGGTCTCTCAGTTTCTTGCTCATGCTCCT
TGCTATGCCTCTCCACCACGATGAATTCTCACCCCTCTGTAACCATAAGT
CTCATGACGTCTTTCTCCTATAAGCTTCCCTGGTCATGGTGATTTATAAC
AGCAATGGAGAAGTAGTCAATAGAGAAGTCGGTACCACAGAGTGGGCTGT
GGCTGATGACCCCAACGCGTCGTTTGTTGGAAAAGATGAATTCTTTGAAA
CTTTGATGGAAACTGCAAACAAAACTATTTGCCCTCCTATAAGGAACTTA
AGGGTGAGAAAAAAAAGGTTCTTAAACCTGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXATATTTCTGGGAGCAGTAGAGAGTCTCTGCATGGTTTGCAT
TTTGAAGAGTTGGTCAAATAGGGAAAGACCAGTCAAGGGGCTCCTAGGCT
CTGGAGGAACAAAGATGGCCCCAAGAGGCTGGCCATCCTCCAGCCATGGG
GAGTCACTGAAAGCTGTGAGGAGGGCCACCACACTGCAAAGGCTGTCCTA
AGAGGTTTGAACCGATGGTAAAGGATGGAGCAGAGGAAAAGAGAGCAGGT
CAGAGGCAGGAGCCCCTGCAGCTGCTCACAGTTCAGCATCGCATCTCTAT
GGGGAAGCTGCCTTTCTCCTCATTCTAATTTATGGCCAAGATGAGTTGCC
TATTATTAAGGTGGTTCTAAGTCGGAATCAATTGGTTCTGAGAATCCAAG
AGACACTGTGATGAAACTACCTTATAAACAAAACAAAACAAGCAGGGAAG
TGGTGACATCAAAGGATCTTTGTGAGTGACTTGCAGACTCTAAGCCTTAA
ATTCACTAAAAACAGGGAGTGGATGAGCCCTGGGGGCCTTTTCCTGTTCC
CAAAGCCTGTGGATTTGGTCCCCATGAAGAGCTTACGACCCCTCTGGACC
CCAAATCCTAAAAATCCCCCTGAGGTGATTGCCCTTTTGTGGATTACACC
CCTCCCCGGCCCGGTGACCTGTCACCATTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_m11.g1 MSMg01no359_m11.g1 CHROMAT_FILE:
MSMg01no359_m11.g1 PHD_FILE: MSMg01no359_m11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:21 2005
         (496 letters)



>mm_chr2_36056721_36057616
          Length = 896

 Score =  872 bits (451), Expect = 0.0
 Identities = 486/501 (97%), Gaps = 10/501 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   atatttctgggagcagtagagagtctctgcatggtttgcattttgaagagttggtcaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 696 atatttctgggagcagtagagagtctctgcatggtttgcattttgaagagttggtcaaat 637

                                                                       
Query: 61  agggaaag-accagtcaaggggctcctaggctctggaggaacaaagatggccccaagagg 119
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 agggaaagaaccagtcaaggggctcctaggctctggaggaacaaagatggccccaagagg 577

                                                                       
Query: 120 ctggccatcctccagccatggggagtcactgaaagctgtgaggagggccaccacactgca 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ctggccatcctccagccatggggagtcactgaaagctgtgaggagggccaccacactgca 517

                                                                       
Query: 180 aaggctgtcctaagaggtttgaaccgatggtaaaggatggagcagaggaaaagagagcag 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 aaggctgtcctaagaggtttgaaccgatggtaaaggatggagcagaggaaaagagagcag 457

                                                                       
Query: 240 gtcagaggcaggagcccctgcagctgctcacagttcagcatcgcatctctatggggaagc 299
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 456 gtcagaggcaggagcccctgcagctgctcacagttcagcattgcatctctatggggaagc 397

                                                                       
Query: 300 tgcc--tttct--cctcattctaatttatggccaagatgagttgcctattattaaggtgg 355
           |     ||| |  ||  ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 396 t---aatttatggcc--attctaatttatggccaagatgagttgcctaatattaaggtgg 342

                                                                       
Query: 356 ttctaagtcggaatcaattggttctgagaatccaagagacactgtgatgaaactacctta 415
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ttctaagtcagaatcaattggttctgagaatccaagagacactgtgatgaaactacctta 282

                                                                       
Query: 416 taaacaaaacaaaacaagcagggaagtggtgacatcaaaggatctttgtgagtgacttgc 475
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 281 taaacaaaacaaaacaagcagggaactggtgacatcaaaggatctttgtgagtgacttgc 222

                                
Query: 476 agactctaagccttaaattca 496
           |||||||||||||||||||||
Sbjct: 221 agactctaagccttaaattca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space:   430596
Effective search space used:   430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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