BAC Information

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BAC

Clone NameMSMg01-360G15
Chromosome2 (Build37)
Map Location 61,446,598 - 61,446,988
singlet/doubletsinglet
Overlap geneTank
Upstream geneItgb6, Rbms1, ENSMUSG00000075325
Downstream genePsmd14, Tbr1, LOC100039274, Slc4a10, Dpp4, Gcg, Fap, Ifih1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360G15.T7 (MSMg01no360_g15.b1)MSMg01-360G15.TJ (MSMg01no360_g15.g1)
ACCAG469595AG469596
length740770
length of high quality
(start - end)		633 (67 - 699)394 (71 - 464)
definitionCHROMAT_FILE: MSMg01no360_g15.b1 PHD_FILE: MSMg01no360_g15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:09 2005CHROMAT_FILE: MSMg01no360_g15.g1 PHD_FILE: MSMg01no360_g15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTGCTGATCTCGGTTGCACTATTCCCTGTCCCCATCTCCACTTTTACTA
ACTAGGTCATTTCTTTGGTTAGGTTATTCTTTGGTTAATTTGGCTAAGTA
TTTGTCTATTTTTCTTTTCAAAAGAACCAATGATACATTTGACTAATTGC
TCATATTATTCTTTTAGTCTCCATCTCATTAATTTCTATCATGATCTTTA
TTCTTTTTTATCTTTTGTGTTTTATTTTTGTCTTGTTCTTAGTTGCCTAA
GATCTTAAACTTTATTTGAAATACGACTACTTTTCTAATGCAAACATTCA
CAGATATAAACTTTCTCTTTAGAACTATCTTTTCTGTGTCTCCAAGATAA
TTTATTCTTTTGTTTTCATTTGTTTTGAGGAAGTTTTTAATTTTCTCTGA
TTTTCTAGTAACCCATTTATTGTTTGAAGGTGTTTTGTCTAGTTTTTTCT
TTCTATTTATTGTTAGTTTATTCCACTCTGATCAAGTAGAATATGAGAAA
ATATTTCTCCTTCTTCCTCTCCCTCCTCTTCCTCTTCCTCTTCCTCCTCT
TCCTCTTCCTCTTCCTCCTCTTTCTCCTCCTCCCTGTCCTCCTCCTCCTC
TTCCATTTCCTCCTCCTCTTTGTCAAATCTTGCTTTCTGGCCTCTAATGT
AACTTATTTTAAAGAGAGTTCCATGAGACTCTGAGAACAG

ATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGGGTTTTTCAGGCATACAAGGCAGGAACA
CTGAGGCTCTGCTCTACATCTGGGGCTTCTGCTCCTATTTCCTCTTCTCT
TCTGGAGAAGAACAAAGAGTGCTTATGAGGGGCATGATCTCAGGGAAAAC
TGTCACTGATGCAAAAGCTCCTTTCTTTTTTGTAACAGCGCTTTTTGGCA
CTTGACATTTTTTAACTTGAATGAGTTTCAATTTACTAATCCGTTTCTTT
TGCTGCTTGCAATTTCTTTTGGTGCCTTATCTAAAAAACTATGACCTAAT
CCAAAAACAGACATATATTTTCATCTGTTTTCCTAGAAGTGCTTTACAAT
TTTAGTGTTTATGCTTGGAGATGTGTGTGTATATATATATATATATATAT
GTGNTGTGTGTGNGNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NTNNNNTNNNTNTNTNTNTNTTNNTTNNTNTTTNTTTTTTNTTTTNTTTT
NTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTNTTTTTTTTTT
TTTNTTNTTTTTTTTTTTTTTTNTTNTTTTTTTTTTTTTTTTNNTTTTNN
NTTNNTTTTTTTTTTTTTTTTTTTNTTTTTTNTTTTTTTNNTTNTTNTTT
TTNTTTTTTNNTTTTTTTTTTTTTTTTNTTTTTTNNTTTTTTTTTTNNTT
TTTTNTTTNTTTTNTTNTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_g15.g1 MSMg01no360_g15.g1 CHROMAT_FILE:
MSMg01no360_g15.g1 PHD_FILE: MSMg01no360_g15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:09 2005
         (394 letters)



>mm_chr2_61446430_61447223
          Length = 794

 Score =  712 bits (368), Expect = 0.0
 Identities = 386/392 (98%), Gaps = 1/392 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgggtttttcaggcatacaaggcaggaacactgaggctctgctctacatctggggcttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tgggtttttcaggcatacaaggcaggaacactgaggctctgctctacatctggggcttct 500

                                                                       
Query: 61  gctcctatttcctcttctcttctggagaagaacaaagagtgcttatgaggggcatgatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gctcctatttcctcttctcttctggagaagaacaaagagtgcttatgaggggcatgatct 440

                                                                       
Query: 121 cagggaaaactgtcactgatgcaaaagctcctttcttttttgtaacagcgctttttggca 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 439 cagggaaaactgtcactgatgcaaaagctcctttcttttttgtaacagtgctttttggca 380

                                                                       
Query: 181 cttgacattttttaacttgaatgagtttcaatttactaatccgtttcttttgctgcttgc 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 379 cttgacattttttaacttgaatgagtttcaatttactaatccttttcttttgctgcttgc 320

                                                                       
Query: 241 aatttcttttggtgccttatctaaaaaactatgacctaatccaaaaacagacatatattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aatttcttttggtgccttatctaaaaaactatgacctaatccaaaaacagacatatattt 260

                                                                       
Query: 301 tcatctgttttcctagaagtgctttacaattttagtgtttatgcttggagatgtgtgtgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tcatctgttttcctagaagtgctttacaattttagtgtttatgcttggagatgtgtgtgt 200

                                           
Query: 361 atatatatatatatatatatgtgntgtgtgtg 392
           |||||||||||||| | | |||| ||||||||
Sbjct: 199 atatatatatatatgtgtgtgtg-tgtgtgtg 169


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 794
Length adjustment: 9
Effective length of query: 385
Effective length of database: 785
Effective search space:   302225
Effective search space used:   302225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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