Query= MSMg01no361_b10.b1 MSMg01no361_b10.b1 CHROMAT_FILE:
MSMg01no361_b10.b1 PHD_FILE: MSMg01no361_b10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:01 2005
(707 letters)
>mm_chr2_12243734_12244833
Length = 1100
Score = 1220 bits (631), Expect = 0.0
Identities = 683/707 (96%), Gaps = 13/707 (1%)
Strand = Plus / Minus
Query: 4 ggaattccaaatttctttcactgagcagaccatcatttt---acacttgggagagttgag 60
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct: 900 ggaattccaaatttctttcactgagcagaccataattttacaacacttgggagagttgag 841
Query: 61 caattagagcagatgtaggagaaacattgagacaccacttgtgttcctgttgagcagctt 120
|||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 840 caattaaagc------aggagaaacattgagacaccactcgtgttcctgttgagcagctt 787
Query: 121 acaaggactagagggcgaagaattcatcttgtcttctgctgtgctcagtgctaatcacat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 acaaggactagagggcgaagaattcatcttgtcttctgctgtgctcagtgctaatcacat 727
Query: 181 acccacctaaactcagtaaacacttactgatcaattaaataaaagccaatgcaaccttcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 acccacctaaactcagtaaacacttactgatcaattaaataaaagccaatgcaaccttcc 667
Query: 241 ctcaaatattcatacatcttcatagcagctgaaaaaaataggactgggtggtgttataca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 ctcaaatattcatacatcttcatagcagctgaaaaaaataggactgggtggtgttataca 607
Query: 301 aacaagaatattagatttgtatgtgtgtgatccactggatacaactgtgactgattgcaa 360
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 aacaagaatattggatttgtatgtgtgtgatccactggatacaactgtgactgattgcaa 547
Query: 361 agacataaaaagagacctccaaagagggaggttatggagaagaaaaaacaattgtgatct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 agacataaaaagagacctccaaagagggaggttatggagaagaaaaaacaattgtgatct 487
Query: 421 gtagaagcaaaaaatattgaattaatctttggagtgaggttatttataaaatggtcacca 480
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gtagaagcaaagaatattggattaatctttggagtgaggttatttataaaatggtcacca 427
Query: 481 tctttgtaagtctaactgtctgtctataaagtgggtctggagaatggttttcacctagcg 540
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tctttgtaagtctaa----ctgtctataaagtgggtctggagaatggttttcacctagcg 371
Query: 541 gccacacaaggcaggcaaatgtggcagaattctcattccaccagaccctttgcctcttag 600
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 370 gccacacaaggcaggcaaatgtggcagaattctcattccacccgaccctttgcctcttag 311
Query: 601 gcaagtgagagagggtctggaaggggatggggccacaggcatacattttaaactatttga 660
| |||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||
Sbjct: 310 gtaagtgagagagggtctggaaggggatggggccacaggcctatatttttaactatttga 251
Query: 661 ggataaacattgtgttggcacattacttggtatcaacagagcatcct 707
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ggataaacattgtgttggcacattacttggtatcaacagagcatcct 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 707
Length of database: 1100
Length adjustment: 10
Effective length of query: 697
Effective length of database: 1090
Effective search space: 759730
Effective search space used: 759730
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no361_b10.g1 MSMg01no361_b10.g1 CHROMAT_FILE:
MSMg01no361_b10.g1 PHD_FILE: MSMg01no361_b10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:01 2005
(452 letters)
>mm_chr2_12207232_12208083
Length = 852
Score = 774 bits (400), Expect = 0.0
Identities = 437/452 (96%), Gaps = 6/452 (1%)
Strand = Plus / Plus
Query: 1 tgctgttttataaggtacagcatgagaagtgagaaattagaaataaagaaacaaacccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgctgttttataaggtacagcatgagaagtgagaaattagaaataaagaaacaaacccat 260
Query: 61 gagctccccaggggaaatcacaagccacctgtagatcattggcacataggctgagaggca 120
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagctccccaggggaaatcacacgccacctgtagatcattggcacataggctgagaggca 320
Query: 121 gacttgactgtggtttggtctgcagtgataaaaaccatcaatttaacctcagcttctaca 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 321 gacttgactgtggtttggtctgcactgataaaaaccatcaatttaacctcagcttctaca 380
Query: 181 aatcactttgctatagtcacattgtctgggttagttttctctcttacctgtgcacatgta 240
|||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||
Sbjct: 381 aatcactttgctatagtcacattggctgggatagttttctctcttacctatgcacatgta 440
Query: 241 tgtgcacacacacacacacacacacacacacacacacacacacacacacacacacacacc 300
|||||||||||| ||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 441 tgtgcacacacaaacacacacacaca-a-----acacacacacacacacacacacacacc 494
Query: 301 actcttcagatgtctttctaaatcctttcctctgatgtaagctttccttgacttagaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 actcttcagatgtctttctaaatcctttcctctgatgtaagctttccttgacttagaaaa 554
Query: 361 tgcacatcttccaatcaaatatgaaatctttctgcatccctaaattctttttcattttct 420
||| |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 555 tgctcatctttcaatcaaatatgaagtctttctgcatccctaaattctttttcattttct 614
Query: 421 tctactaggacaccttggaataaaacttcaat 452
||||||||||||||||||||||||||||||||
Sbjct: 615 tctactaggacaccttggaataaaacttcaat 646
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space: 372164
Effective search space used: 372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
