Query= MSMg01no361_f08.b1 MSMg01no361_f08.b1 CHROMAT_FILE:
MSMg01no361_f08.b1 PHD_FILE: MSMg01no361_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:21 2005
(445 letters)
>mm_chr2_78382282_78383126
Length = 845
Score = 820 bits (424), Expect = 0.0
Identities = 439/448 (97%), Gaps = 7/448 (1%)
Strand = Plus / Plus
Query: 5 gaattctacaaacagcaagaatgagagaatttcaagtttttagctagcatcggtctgtgt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 gaattctacaaacagcaagaatgagagaatttcaagtttttagctagcatcggtctgtgt 257
Query: 65 ctcctgagaagtgatttatttgttctagttgttcagggtttttgttgttgtttgtttgtt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ctcctgagaagtgatttatttgttctagttgttcagggtttttgttgttgtttgtttgtt 317
Query: 125 tgtgttttagttaggttttttttttttttttttttttt-------gctgcttttgcctct 177
|||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 318 tgtgttttagttaggttttttttttttttttttttttttttttttgctgcttttgcctct 377
Query: 178 gccaaatctgtcttttgtcttaatcttttactctcatttatccaaatcctcttcagttag 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 gccaaatctgtcttttgtcttaatcttttactctcatttatccaaatcctcttcagttag 437
Query: 238 ccaaagactattgatttcccattgcctagtataagaccatgaagttccttgttcttgttc 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ccaaagactattgatttcccattgcctagtataagaccatgaagttccttgttcttgttc 497
Query: 298 ctatttacaccaagtatttaatctttaagaagctattatatttgttgctgatagtaggca 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ctatttacaccaagtatttaatctttaagaagctattatatttgttgctgatagtaggca 557
Query: 358 gtatttaatttgcagcatcttcttaagtttgtggtcagctgttataaactgaaaccatca 417
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gtatttaatttgtagcatcttcttaagtttgtggtcagctgttataaactgaaaccatca 617
Query: 418 cactgtccaaactccatatatatacata 445
|||||||||||||| |||||||||||||
Sbjct: 618 cactgtccaaactctatatatatacata 645
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space: 363225
Effective search space used: 363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no361_f08.g1 MSMg01no361_f08.g1 CHROMAT_FILE:
MSMg01no361_f08.g1 PHD_FILE: MSMg01no361_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:21 2005
(552 letters)
>mm_chr2_78567287_78568239
Length = 953
Score = 841 bits (435), Expect = 0.0
Identities = 500/531 (94%), Gaps = 19/531 (3%)
Strand = Plus / Minus
Query: 1 agtgtttttcattgttccttctgtctttatgaacacttttttatttttcttgatttctat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 agtgtttttcattgttccttctgtctttatgaacacttttttatttttcttgatttctat 466
Query: 61 ttcatctaataatgaccattttaccccttgtctctccctgtggtcatttacctgataact 120
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ttcatccaataatgacaattttaccccttgtctctccctgtggtcatttacctgataact 406
Query: 121 ttacttcatttctctctttcaaatatttttgtgctgtgttgtttaagatataacttttgt 180
|||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||
Sbjct: 405 ttacttcatttctctctttcaagtatttttgtgctgtgttctttaagatatgacttttgc 346
Query: 181 tagtgttttaatttagacaagttatttcatttcattttcatccaatttgggaacactgac 240
|||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 345 tagtattttaatttagacaagttatttcatttcattttcattcaatttgggaacactgac 286
Query: 241 atttgctgtctcacagatgtgtctggcttttcttgccatagttgaagaaatatttatatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 atttgctgtctcacagatgtgtctggcttttcttgccatagttgaagaaatatttatatt 226
Query: 301 tagtaacccttta-caagctttttt-----------atacatttcttggccttttggttt 348
|||||||| ||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 225 tagtaaccttttttcaagcttttttttaatatatatatacatttcttggccttttggttt 166
Query: 349 ttcagtgttttcccagtgtgaatggttttgttggtattagttttgatcttggacattatc 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 ttcagtgttttcccagtgtgaatggttttgttggtattagttttgatcttggacattatc 106
Query: 409 ttcaagactttttcagagttcttccatggacatcacatctatctttgctgaagagataaa 468
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 105 ttcaagactttttcagagttcttccatggacatcacatctatctttgctgaagaga---a 49
Query: 469 tgag-atttactcattcctttgtaactaaaaacttacagttttcccattgc 518
|| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 48 cgaacat---ctcattcctttgtaactaaaaacttacagttttcccattgc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 953
Length adjustment: 10
Effective length of query: 542
Effective length of database: 943
Effective search space: 511106
Effective search space used: 511106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
