BAC Information

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BAC

Clone NameMSMg01-361I20
Chromosome2 (Build37)
Map Location 26,294,262 - 26,471,535
singlet/doubletdoublet
Overlap geneAU024582, Notch1, Egfl7, Agpat2
Upstream geneAbca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887, B230208H17Rik, 4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5, LOC620709, Lcn10, Lcn13, Bmyc, LOC383678, Lcn3, Lcn11, LOC620858, Glt6d1, Lcn9, Sohlh1, Kcnt1, Camsap1, LOC100040100, LOC665199, Ubadc1, Btbd14a, C330006A16Rik, Lhx3, Qscn6l1, C030048H21Rik, 4932418E24Rik, Gpsm1, D2Bwg1335e, Card9, Snapc4, Sdccag3, Pmpca, Inpp5e
Downstream geneB230317C12Rik, 5730588L14Rik, LOC100039446, Lcn4, LOC669582, Abo, Surf6, Surf5-ps, Surf5, Rpl7a, Surf1, Surf2, Surf4, Gm711, Rexo4, Adamts13, 5930434B04Rik, Slc2a6, LOC665315, 1110002H13Rik, Adamtsl2, C630035N08Rik, Dbh, Sardh, Vav2, D2Bwg1423e, Brd3, Wdr5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361I20.T7 (MSMg01no361_i20.b1)MSMg01-361I20.TJ (MSMg01no361_i20.g1)
ACCAG470453AG470454
length759758
length of high quality
(start - end)		606 (48 - 653)515 (78 - 592)
definitionCHROMAT_FILE: MSMg01no361_i20.b1 PHD_FILE: MSMg01no361_i20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:38 2005CHROMAT_FILE: MSMg01no361_i20.g1 PHD_FILE: MSMg01no361_i20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:56:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,294,262 - 26,294,863)(26,471,021 - 26,471,535)
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTGTGGCCGAGGAGGCACCAGCTCTGGCTGGGCTCTTTCTAGTC
TATGCTGGTCCTGAGCATCTTTTGTTACCTGCTGGTAGAAATGATCCTGG
TTATGAAGCCCAGGCCCAGATTGTCTGGGATGATTGGGAAGAGGCTGCTG
AGAAGCTGGGCCATCTGAAGGAGATGGGCTGTATAGTCTCACAGGATTTT
CCAAAGTTCTATTTAATGTGAAGTCTAGGGCGCCAACAGCTTCTTCCTGG
TTACTAGAGTGCTTTGCCTTATTACTGTTAGGAACCAAAGTACTGCTTGC
AGGTGGAACTAGCATCACACTTGTATTGCCAGCAGGGCTACTAACAAACT
CGGAAGGGCCCTTTTCTGCATTTGGATGCGGACTTTGAGGGGTTTGAGGG
GATAGCTGTTGAACCAACCAACTGGCAGACTGGCTAGCAATCATTTCAGA
AGACCCCGAACCTTGAGGGGCACAATTCTGGGGGATACTGCTAGGCAAAG
ACGCGCCAGTGACAGCACTGGCTGGAACTCCAGACAGAGCAGCACGTTCT
TCAGGATCACCACCGAGAGCCCAGTTGATGCTCACTATGGATCTCTCCCC
CACCACAGCATCTCCTCAGGACTGATTCTTCTCATTAGGATTCAGNAAGG
ACACAGAAAATTAATAGGCTGAGCCAAATTATAGCTTTGATCAAGCTGAG
CAATCCTGA

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGGGCAGCATGAATCCATGTTGA
GGGTCACAGTCATTCATATCTGGCCCAGAGTAAGTGACCTCTGAGTCCCT
TTGGAGCAGAGCTAAGTATTGCATGGACAGTGACATGTGCCGGCCCTGAA
TGTGTGTTTAATCAGTGCATTCTGAGTCCTGGGCAATACATGGTATCTGC
CCTGGCAGGGAAACAGGTGGGTAGCAACATGCACCCAGTGAGACTTTGGC
AGACCCTCTGACACCCCCAGACCCTGGAGGCATCAACACCATTCCTGAGT
TTCCCTGTCTGCTCATACATTCATTCTATGCTTAGCACTTTCCTATGACT
TAGCAGCTGGGCCCGGAAGATGAGTAGGCAGAACCTCACAGGGGAGCAGG
GAGACAGGCTCACTGCAGCACCGTGGCTCACTGTAATACAGAGGAGGGAC
AAGAACTCTATGGTGGAGACTCAAGTGGGAAAGATCTGTACAGGAGCTGT
CAACACACTATGTATACCTGCCTGACCAGAGTAAGTGAGATTCTCACAGC
CAGAAAGAAAGCACCTGAGGCCCAGCTTATGACCAGTCACCCCAGACTAG
AATTACAATGTTGTGGTACGAGCAGGCATGGACTTGCGATATTGACCTGG
CATGTGATTATAGCCCTGACGCCCACAGTCTATAATCTAACGTACCTGGA
TTTTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_i20.b1 MSMg01no361_i20.b1 CHROMAT_FILE:
MSMg01no361_i20.b1 PHD_FILE: MSMg01no361_i20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:38 2005
         (606 letters)



>mm_chr2_26294058_26295063
          Length = 1006

 Score = 1133 bits (586), Expect = 0.0
 Identities = 598/602 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtggccgaggaggcaccagctctggctgggctctttctagtctatgctggtcc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtggccgaggaggcaccagctctggctgggctctttctagtctatgctggtcc 264

                                                                       
Query: 65  tgagcatcttttgttacctgctggtagaaatgatcctggttatgaagcccaggcccagat 124
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 265 tgagcatcttttgttacctgctggtagaaatgatcctggttatgcagcccaggcccagat 324

                                                                       
Query: 125 tgtctgggatgattgggaagaggctgctgagaagctgggccatctgaaggagatgggctg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgtctgggatgattgggaagaggctgctgagaagctgggccatctgaaggagatgggctg 384

                                                                       
Query: 185 tatagtctcacaggattttccaaagttctatttaatgtgaagtctagggcgccaacagct 244
           || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tacattctcacaggattttccaaagttctatttaatgtgaagtctagggcgccaacagct 444

                                                                       
Query: 245 tcttcctggttactagagtgctttgccttattactgttaggaaccaaagtactgcttgca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcttcctggttactagagtgctttgccttattactgttaggaaccaaagtactgcttgca 504

                                                                       
Query: 305 ggtggaactagcatcacacttgtattgccagcagggctactaacaaactcggaagggccc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggtggaactagcatcacacttgtattgccagcagggctactaacaaactcggaagggccc 564

                                                                       
Query: 365 ttttctgcatttggatgcggactttgaggggtttgaggggatagctgttgaaccaaccaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttttctgcatttggatgcggactttgaggggtttgaggggatagctgttgaaccaaccaa 624

                                                                       
Query: 425 ctggcagactggctagcaatcatttcagaagaccccgaaccttgaggggcacaattctgg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctggcagactggctagcaatcatttcagaagaccccgaaccttgaggggcacaattctgg 684

                                                                       
Query: 485 gggatactgctaggcaaagacgcgccagtgacagcactggctggaactccagacagagca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gggatactgctaggcaaagacgcgccagtgacagcactggctggaactccagacagagca 744

                                                                       
Query: 545 gcacgttcttcaggatcaccaccgagagcccagttgatgctcactatggatctctccccc 604
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 745 gcacgttcttcaggatcaccaccgagagcccagttgttgctcactatggatctctccccc 804

             
Query: 605 ac 606
           ||
Sbjct: 805 ac 806


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space:   593616
Effective search space used:   593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no361_i20.g1 MSMg01no361_i20.g1 CHROMAT_FILE:
MSMg01no361_i20.g1 PHD_FILE: MSMg01no361_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:56:38 2005
         (515 letters)



>mm_chr2_26470821_26471735
          Length = 915

 Score =  980 bits (507), Expect = 0.0
 Identities = 513/515 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agggcagcatgaatccatgttgagggtcacagtcattcatatctggcccagagtaagtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 agggcagcatgaatccatgttgagggtcacagtcattcatatctggcccagagtaagtga 656

                                                                       
Query: 61  cctctgagtccctttggagcagagctaagtattgcatggacagtgacatgtgccggccct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 cctctgagtccctttggagcagagctaagtattgcatggacagtgacatgtgccggccct 596

                                                                       
Query: 121 gaatgtgtgtttaatcagtgcattctgagtcctgggcaatacatggtatctgccctggca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 gaatgtgtgtttaatcagtgcattctgagtcctgggcaatacatggtatctgccctggca 536

                                                                       
Query: 181 gggaaacaggtgggtagcaacatgcacccagtgagactttggcagaccctctgacacccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 gggaaacaggtgggtagcaacatgcacccagtgagactttggcagaccctctgacacccc 476

                                                                       
Query: 241 cagaccctggaggcatcaacaccattcctgagtttccctgtctgctcatacattcattct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 cagaccctggaggcatcaacaccattcctgagtttccctgtctgctcatacattcattct 416

                                                                       
Query: 301 atgcttagcactttcctatgacttagcagctgggcccggaagatgagtaggcagaacctc 360
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 atgcttagcattttcctatgacttagcagctgggcccggaagatgagtaggcagaacctc 356

                                                                       
Query: 361 acaggggagcagggagacaggctcactgcagcaccgtggctcactgtaatacagaggagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 acaggggagcagggagacaggctcactgcagcaccgtggctcactgtaatacagaggagg 296

                                                                       
Query: 421 gacaagaactctatggtggagactcaagtgggaaagatctgtacaggagctgtcaacaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 gacaagaactctatggtggagactcaagtgggaaagatctgtacaggagctgtcaacaca 236

                                              
Query: 481 ctatgtatacctgcctgaccagagtaagtgagatt 515
           ||| |||||||||||||||||||||||||||||||
Sbjct: 235 ctaggtatacctgcctgaccagagtaagtgagatt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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