BAC Information

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BAC

Clone NameMSMg01-361O24
Chromosome2 (Build37)
Map Location 18,601,276 - 18,735,730
singlet/doubletdoublet
Overlap geneBmi1, EG667477, LOC100041448, BC061194, LOC667493, LOC100041479
Upstream geneNebl, LOC100041319, LOC100041047, 1700113O17Rik, A930004D18Rik, 2810030E01Rik, Mllt10, LOC641254, Dnajc1, LOC100041388, LOC623325, LOC625815, Commd3
Downstream genePip5k2a, 4930426L09Rik, LOC667521, Armc3, Msrb2, LOC100041196, Ptf1a, LOC100041534, 4921504E06Rik, LOC100041244, Otud1, LOC667564
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-361O24.T7 (MSMg01no361_o24.b1)MSMg01-361O24.TJ (MSMg01no361_o24.g1)
ACCAG470744AG470745
length783784
length of high quality
(start - end)
509 (49 - 557)457 (80 - 536)
definitionCHROMAT_FILE: MSMg01no361_o24.b1 PHD_FILE: MSMg01no361_o24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:07 2005CHROMAT_FILE: MSMg01no361_o24.g1 PHD_FILE: MSMg01no361_o24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,601,276 - 18,601,784)(18,735,287 - 18,735,730)
sequence
NCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCAATTTATGGTGAATTTGAGAGACTTTGATCAAGTTCATGTG
ACTGAAATGTTCAAAGAGAACTAACTAGTGGTCACCTTCTATTGAGGTTT
GACTGCTCTTTTGAGTTAGTGTTTGCAATTTTATAATAGAATGTAACATG
GAGAGGAGGAGGCAAGATAGAGCCCTTTGGTGGGAACTTGATGATGTGTG
AGTATTGGATATGGTTTCTTTCATATGCAGAGCATCAGCCTCACTCTTTT
TAGGAAAGAGCCTGTGGTTTCACAAGAGAGTTGCCTTTAATCACTAAGTA
TGGTTGAATTTACAGCTTGCTCCTTTTGAGAGTCATAATTTCATTTACTC
CTTCTCAGCCTGCTTTCCCCGCACTGATGCTACTTGTTGACAGAATTCCG
AACAAGTAATCCGGAGCAGCTCTGATTGAAGTCACTAGTTTCCCCTTCAG
TCACTTTCAGAGAGGCTTGGTTTGGGTTTGGACCATCTTTAGTACCCATT
CCTGTTAATTGCAGCCATTGCGGCATGCTGGTTGGCAGTTCCCTCTTGTG
TATAAATTTTCCTTATAATAAATCTCCCACTTGCATCTTATTGCCAATTA
TGCTAATTCCTAAATTTTTGTTACAGCCACTTTTGGGGCTTTACCTTTTT
GCCCGCGTATAAAATTCTACCTTGGTTTTATAATCTTTTTGAGGAACATA
AAGGATTTTTCCCCCTTACTTCTCTCGCTTGTN
NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGTTCAAACTACTGTTTCC
GAAGTGGCTCATGATTTATCTGACAGGCTCTGTCATTTGGCTGTCGGTGA
CGGGTTTGTGAGGGAAGGTTCATGGTGACTTTCCGTGCTTCCTTGGCATT
TAGAATTTGACAGTGAATTTGCTCATGTATTTTCCCCTGGAAATATTTGC
CTGGTGTTTCTGAACTTGGAGCCTCTGTTCTCTCAGGCCAGACTCTTCGG
GGATTAACAAGCTGACAGTGATCTTGTGCAGTGCTTTTCCACCTGCCTCA
GCCTTGCAAGTCTAAGAGAACTGAACAAGTCCTGAAATTACTGGGCCCTT
TCCACCTCTGTGGTTGTTCCAAAGCAGTTGCAAATATTGACTAAAGCTAT
GTCCTGGGAAAGTATTGAGGCAGGATGCAAAGGTACACGGAGGGATGTCC
TGCCTCTCACATGACACTGTCAAACAGTTGGTGCCCAAGAAATGTTAGCT
ATTTCTGTTTCCAAGAGAAAAGCAATGAGGAACAGCATGGANAGTTGATG
GAGGCTGTGCTAATTCCTCAGAGAACTGAGTAAACAAAGGTGCTACCCAA
ATGAGGGTTCCCATGGGGCTGAGCCTTGTGTAAAAAGGGAAACTGGCCGG
CAAAGACAAATGATTACTTTCCGTCCCCACCCTTTCCCTTTCTTTTTTTA
AAGGTAGAATTTCCCCCTCACCCCCCTTTTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no361_o24.b1 MSMg01no361_o24.b1 CHROMAT_FILE:
MSMg01no361_o24.b1 PHD_FILE: MSMg01no361_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:07 2005
         (509 letters)



>mm_chr2_18601072_18601984
          Length = 913

 Score =  911 bits (471), Expect = 0.0
 Identities = 498/509 (97%), Gaps = 4/509 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaatttatggtgaatttgagagactttgatcaagttcatgtgactgaaatgttc 64
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaatttaaagtgaatttgagagactttgatcaagttcatgtgactgaaatgttc 264

                                                                       
Query: 65  aaagagaactaactagtggtcaccttctattgaggtttgactgctcttttgagttagtgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 265 aaagagaactaactagtggtcaccttctattgaggtttgactgctcttttgggttagtgt 324

                                                                       
Query: 125 ttgcaattttataatagaatgtaacatggagaggaggaggcaagat----agagcccttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||
Sbjct: 325 ttgcaattttataatagaatgtaacatggagaggaggaggcaagatagagagagcccttt 384

                                                                       
Query: 181 ggtgggaacttgatgatgtgtgagtattggatatggtttctttcatatgcagagcatcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggtgggaacttgatgatgtgtgagtattggatatggtttctttcatatgcagagcatcag 444

                                                                       
Query: 241 cctcactctttttaggaaagagcctgtggtttcacaagagagttgcctttaatcactaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cctcactctttttaggaaagagcctgtggtttcacaagagagttgcctttaatcactaag 504

                                                                       
Query: 301 tatggttgaatttacagcttgctccttttgagagtcataatttcatttactccttctcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tatggttgaatttacagcttgctccttttgagagtcataatttcatttactccttctcag 564

                                                                       
Query: 361 cctgctttccccgcactgatgctacttgttgacagaattccgaacaagtaatccggagca 420
           ||||||||||  | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cctgctttccttggattgatgctacttgttgacagaattccgaacaagtaatccggagca 624

                                                                       
Query: 421 gctctgattgaagtcactagtttccccttcagtcactttcagagaggcttggtttgggtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gctctgattgaagtcactagtttccccttcagtcactttcagagaggcttggtttgggtt 684

                                        
Query: 481 tggaccatctttagtacccattcctgtta 509
           |||||||||||||||||||||||||||||
Sbjct: 685 tggaccatctttagtacccattcctgtta 713


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 913
Length adjustment: 10
Effective length of query: 499
Effective length of database: 903
Effective search space:   450597
Effective search space used:   450597
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no361_o24.g1 MSMg01no361_o24.g1 CHROMAT_FILE:
MSMg01no361_o24.g1 PHD_FILE: MSMg01no361_o24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:07 2005
         (457 letters)



>mm_chr2_18734874_18735730
          Length = 857

 Score =  799 bits (413), Expect = 0.0
 Identities = 440/457 (96%), Gaps = 13/457 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgttcaaactactgtttccgaagtggctcatgatttatctgacaggctctgtcatttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 tgtgttcaaactactgtttccgaagtggctcatgatttatctgacaggctctgtcatttg 798

                                                                       
Query: 61  gctgtcggtgacgggtttgtgagggaaggttcatggtgactttccgtgcttccttggcat 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 797 gctgtcggtgacgggtttgtgagggaaggttcatggtaactttccgtgcttccttggcat 738

                                                                       
Query: 121 ttagaatttgacagtgaatttgctcatgtattttcccctggaaatatttgcctggtgttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ttagaatttgacagtgaatttgctcatgtattttcccctggaaatatttgcctggtgttt 678

                                                                       
Query: 181 ctgaacttggagcctctgttctctcaggccagactcttcggggattaacaagctgacagt 240
           ||||||||||||||||||||             |||||||||||||||||||||||||||
Sbjct: 677 ctgaacttggagcctctgtt-------------ctcttcggggattaacaagctgacagt 631

                                                                       
Query: 241 gatcttgtgcagtgcttttccacctgcctcagccttgcaagtctaagagaactgaacaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gatcttgtgcagtgcttttccacctgcctcagccttgcaagtctaagagaactgaacaag 571

                                                                       
Query: 301 tcctgaaattactgggccctttccacctctgtggttgttccaaagcagttgcaaatattg 360
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 tcctgagattactgggccctttccacctctgtggttgttccaaagcagttgcaaatattg 511

                                                                       
Query: 361 actaaagctatgtcctgggaaagtattgaggcaggatgcaaaggtacacggagggatgtc 420
           |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 510 actaaagctatgtcctgggaaagtattgaggcaggatgcaaaggtatatggagggatgtc 451

                                                
Query: 421 ctgcctctcacatgacactgtcaaacagttggtgccc 457
           |||||||||||||||||||||||||||||||||||||
Sbjct: 450 ctgcctctcacatgacactgtcaaacagttggtgccc 414


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space:   378609
Effective search space used:   378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)