Query= MSMg01no361_o24.b1 MSMg01no361_o24.b1 CHROMAT_FILE:
MSMg01no361_o24.b1 PHD_FILE: MSMg01no361_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:07 2005
(509 letters)
>mm_chr2_18601072_18601984
Length = 913
Score = 911 bits (471), Expect = 0.0
Identities = 498/509 (97%), Gaps = 4/509 (0%)
Strand = Plus / Plus
Query: 5 gaattccaatttatggtgaatttgagagactttgatcaagttcatgtgactgaaatgttc 64
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaatttaaagtgaatttgagagactttgatcaagttcatgtgactgaaatgttc 264
Query: 65 aaagagaactaactagtggtcaccttctattgaggtttgactgctcttttgagttagtgt 124
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 265 aaagagaactaactagtggtcaccttctattgaggtttgactgctcttttgggttagtgt 324
Query: 125 ttgcaattttataatagaatgtaacatggagaggaggaggcaagat----agagcccttt 180
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 325 ttgcaattttataatagaatgtaacatggagaggaggaggcaagatagagagagcccttt 384
Query: 181 ggtgggaacttgatgatgtgtgagtattggatatggtttctttcatatgcagagcatcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggtgggaacttgatgatgtgtgagtattggatatggtttctttcatatgcagagcatcag 444
Query: 241 cctcactctttttaggaaagagcctgtggtttcacaagagagttgcctttaatcactaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cctcactctttttaggaaagagcctgtggtttcacaagagagttgcctttaatcactaag 504
Query: 301 tatggttgaatttacagcttgctccttttgagagtcataatttcatttactccttctcag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tatggttgaatttacagcttgctccttttgagagtcataatttcatttactccttctcag 564
Query: 361 cctgctttccccgcactgatgctacttgttgacagaattccgaacaagtaatccggagca 420
|||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cctgctttccttggattgatgctacttgttgacagaattccgaacaagtaatccggagca 624
Query: 421 gctctgattgaagtcactagtttccccttcagtcactttcagagaggcttggtttgggtt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gctctgattgaagtcactagtttccccttcagtcactttcagagaggcttggtttgggtt 684
Query: 481 tggaccatctttagtacccattcctgtta 509
|||||||||||||||||||||||||||||
Sbjct: 685 tggaccatctttagtacccattcctgtta 713
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 913
Length adjustment: 10
Effective length of query: 499
Effective length of database: 903
Effective search space: 450597
Effective search space used: 450597
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no361_o24.g1 MSMg01no361_o24.g1 CHROMAT_FILE:
MSMg01no361_o24.g1 PHD_FILE: MSMg01no361_o24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:07 2005
(457 letters)
>mm_chr2_18734874_18735730
Length = 857
Score = 799 bits (413), Expect = 0.0
Identities = 440/457 (96%), Gaps = 13/457 (2%)
Strand = Plus / Minus
Query: 1 tgtgttcaaactactgtttccgaagtggctcatgatttatctgacaggctctgtcatttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 tgtgttcaaactactgtttccgaagtggctcatgatttatctgacaggctctgtcatttg 798
Query: 61 gctgtcggtgacgggtttgtgagggaaggttcatggtgactttccgtgcttccttggcat 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 797 gctgtcggtgacgggtttgtgagggaaggttcatggtaactttccgtgcttccttggcat 738
Query: 121 ttagaatttgacagtgaatttgctcatgtattttcccctggaaatatttgcctggtgttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ttagaatttgacagtgaatttgctcatgtattttcccctggaaatatttgcctggtgttt 678
Query: 181 ctgaacttggagcctctgttctctcaggccagactcttcggggattaacaagctgacagt 240
|||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 677 ctgaacttggagcctctgtt-------------ctcttcggggattaacaagctgacagt 631
Query: 241 gatcttgtgcagtgcttttccacctgcctcagccttgcaagtctaagagaactgaacaag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gatcttgtgcagtgcttttccacctgcctcagccttgcaagtctaagagaactgaacaag 571
Query: 301 tcctgaaattactgggccctttccacctctgtggttgttccaaagcagttgcaaatattg 360
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 tcctgagattactgggccctttccacctctgtggttgttccaaagcagttgcaaatattg 511
Query: 361 actaaagctatgtcctgggaaagtattgaggcaggatgcaaaggtacacggagggatgtc 420
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 510 actaaagctatgtcctgggaaagtattgaggcaggatgcaaaggtatatggagggatgtc 451
Query: 421 ctgcctctcacatgacactgtcaaacagttggtgccc 457
|||||||||||||||||||||||||||||||||||||
Sbjct: 450 ctgcctctcacatgacactgtcaaacagttggtgccc 414
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space: 378609
Effective search space used: 378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|