BAC Information

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BAC

Clone NameMSMg01-362C20
Chromosome2 (Build37)
Map Location 107,069,264 - 107,180,345
singlet/doubletdoublet
Overlap geneKcna4
Upstream geneDcdc5, 9330126M15, C130023O10Rik, LOC677260, 2700007P21Rik, LOC383739, Fshb
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362C20.T7 (MSMg01no362_c20.b1)MSMg01-362C20.TJ (MSMg01no362_c20.g1)
ACCAG470925AG470926
length757761
length of high quality
(start - end)		510 (50 - 559)509 (80 - 588)
definitionCHROMAT_FILE: MSMg01no362_c20.b1 PHD_FILE: MSMg01no362_c20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:27 2005CHROMAT_FILE: MSMg01no362_c20.g1 PHD_FILE: MSMg01no362_c20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,179,855 - 107,180,345)(107,069,264 - 107,069,772)
sequence
NNTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTTATAGCTTTCAGTATTACCAGTGGACAGAAGTGATCTG
TGGTCAGTGTAAACCCTACCTGAAATGTTAAACTTTGATCTTTTCCTGGT
CTAGCAAACATATCACCGGATACTTATGATACTGGTCACTAAAAGTTTCT
GTGGCTTCAATTCAAATACAGATCCTAAGAATAATGACCCACCATGTGTT
GCTAACCTATATTGGATGGGGTAAGGATATCAAGTACATTTTCAACATAG
CGTGCTGTCAATTTGCCAGAGGTTTCCCATAGTAAGTTAAGCGGTAAAGG
GGCACATACACACGTGCATGCATACATACATGCATACATACATACATACA
TACATACATACATACATACATACATACATCATTTTTACATATTTCATCTC
AAGGTACATTTGTTAGAAAAAAACTACTATTAAAAGTAGTCAACATACTG
GAAAAATTTATGCTAAAAAGATTTTGGTGTTCAACAGTACCTAGTGAGCT
ATGGGTACTTGGCAAAAAATATATAAAAATGAGAGATTTCTTATCCCATT
ATAGATAAAATTGAAACAGATAATCTTCTAGATTTCCTTGAGCTCTCTGG
AATGTTTTTTTCTCTGTGCTCCAAAAAGGCTTTGGGAACAGGTTTTCTGG
ATTTAAGCTCTGTAATAGGCCGAACCAAATGGGGTTTTTGGAAATTCATT
TACAAAG

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCATGGAGGCCTGTTTGCAA
AGTCAGTCAGACATTAATGAGGTACAAACCTGGCAGTGGGCGCCCATCAC
TGTGCTATTGCTATTTTTTAGTCCAGTTTCTTTTCCTTCAGAGAAACTGG
GCCTTGTTGGATTTTCATGAAATGTTTCATGGTTTTTGCAAAAACATAAA
GATCAACCCAAGACTTTTATAATCTTTGCTTGTCTTAAAAGAAAATATAT
ATATATAAAGTTTCTCTTACCCCAAGTTCTCCAGACATCATTCTCTTTGA
CTAGTTACCATTTCTGCATAGAGAAGGTTATAAGCCAGGAGAAATCCACA
TCAGGACTAAGGCAGGAACCAAACTGAAGTTGTAGAGAAGAAACTGAAAT
TCAGGCTCTATTCACATTGACCAAATTTAGAGGAAAATACTCTTCATAGC
TCCCCTACGTAATGACTTTAGATAGATCTGTGACTGTCTACGTATTGATT
TCTATTTCAATGCTCACTCAATAGCTCATTTTCCTCGGAATAAACAGCCA
ATTTGCATAAGAAATTATGATAAGAACAATTTCCTCTCTGGGGCGTTTTG
AGCTTTTATTGAAAAACATTAACGCNCCCCCTTTTTTCTTTCCCTCTTTC
CCCCTTAAGGCCCCTATTGCATAATAGGGCTAACATGACAGGAAAGAGAA
TTTAATTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_c20.b1 MSMg01no362_c20.b1 CHROMAT_FILE:
MSMg01no362_c20.b1 PHD_FILE: MSMg01no362_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:27 2005
         (510 letters)



>mm_chr2_107179737_107180646
          Length = 910

 Score =  849 bits (439), Expect = 0.0
 Identities = 483/507 (95%), Gaps = 17/507 (3%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttta-tagctttcagtattaccagtggacagaagtgatctgtggtcagtgtaa 63
           |||||||||||  || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 gaattcttttacaagttttcagtattaccagtggacagaagtgatctgtggtcagtgtaa 550

                                                                       
Query: 64  accctacctgaaatgttaaactttgatcttttcctggtctagcaaacatatcaccggata 123
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 549 accctacttgaaatgttaaactttgatcttttcctggtctagcaaacatatcatcggata 490

                                                                       
Query: 124 cttatgatactggtcactaaaagtttctgtggcttcaattcaaatacagatcctaagaat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 cttatgatactggtcactaaaagtttctgtggcttcaattcaaatacagatcctaagaat 430

                                                                       
Query: 184 aatgacccaccatgtgttgctaacctatattggatggggtaaggatatcaagtacatttt 243
           |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct: 429 aatgacccaccatgtgttgctaacctatattggatgggttaaggatatcaagtgcatttt 370

                                                                       
Query: 244 caacatagcgtgctgtcaatttgccagaggtttcccatagtaagttaagcggtaaagggg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 caacatagcgtgctgtcaatttgccagaggtttcccatagtaagttaagcggtaaagggg 310

                                                                       
Query: 304 cacatacacacgtgcatgcatacatacatgcatacatacatacatacatacatacataca 363
           ||||||||||||||||||||||||||||||||||||||||||  ||              
Sbjct: 309 cacatacacacgtgcatgcatacatacatgcatacatacata--ta-------------- 266

                                                                       
Query: 364 tacatacatacatacatcatttttacatatttcatctcaaggtacatttgttagaaaaaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tacatacatacatacatcatttttacatatttcatctcaaggtacatttgttagaaaaaa 206

                                                                       
Query: 424 actactattaaaagtagtcaacatactggaaaaatttatgctaaaaagattttggtgttc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 actactattaaaagtagtcaacatactggaaaaatttatgctaaaaagattttggtgttc 146

                                      
Query: 484 aacagtacctagtgagctatgggtact 510
           ||||||||||||||||||||| |||||
Sbjct: 145 aacagtacctagtgagctatgagtact 119


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no362_c20.g1 MSMg01no362_c20.g1 CHROMAT_FILE:
MSMg01no362_c20.g1 PHD_FILE: MSMg01no362_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:27 2005
         (509 letters)



>mm_chr2_107069064_107069972
          Length = 909

 Score =  977 bits (505), Expect = 0.0
 Identities = 508/509 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccatggaggcctgtttgcaaagtcagtcagacattaatgaggtacaaacctggcagtgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccatggaggcctgtttgcaaagtcagtcagacattaatgaggtacaaacctggcagtgg 260

                                                                       
Query: 61  gcgcccatcactgtgctattgctattttttagtccagtttcttttccttcagagaaactg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcgcccatcactgtgctattgctattttttagtccagtttcttttccttcagagaaactg 320

                                                                       
Query: 121 ggccttgttggattttcatgaaatgtttcatggtttttgcaaaaacataaagatcaaccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggccttgttggattttcatgaaatgtttcatggtttttgcaaaaacataaagatcaaccc 380

                                                                       
Query: 181 aagacttttataatctttgcttgtcttaaaagaaaatatatatatataaagtttctctta 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 aagacttttataatctttgcttgtcttaaaagaatatatatatatataaagtttctctta 440

                                                                       
Query: 241 ccccaagttctccagacatcattctctttgactagttaccatttctgcatagagaaggtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccccaagttctccagacatcattctctttgactagttaccatttctgcatagagaaggtt 500

                                                                       
Query: 301 ataagccaggagaaatccacatcaggactaaggcaggaaccaaactgaagttgtagagaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ataagccaggagaaatccacatcaggactaaggcaggaaccaaactgaagttgtagagaa 560

                                                                       
Query: 361 gaaactgaaattcaggctctattcacattgaccaaatttagaggaaaatactcttcatag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaaactgaaattcaggctctattcacattgaccaaatttagaggaaaatactcttcatag 620

                                                                       
Query: 421 ctcccctacgtaatgactttagatagatctgtgactgtctacgtattgatttctatttca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcccctacgtaatgactttagatagatctgtgactgtctacgtattgatttctatttca 680

                                        
Query: 481 atgctcactcaatagctcattttcctcgg 509
           |||||||||||||||||||||||||||||
Sbjct: 681 atgctcactcaatagctcattttcctcgg 709


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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