Query= MSMg01no362_e03.b1 MSMg01no362_e03.b1 CHROMAT_FILE:
MSMg01no362_e03.b1 PHD_FILE: MSMg01no362_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:33 2005
(542 letters)
>mm_chr2_9031669_9032610
Length = 942
Score = 957 bits (495), Expect = 0.0
Identities = 528/539 (97%), Gaps = 2/539 (0%)
Strand = Plus / Minus
Query: 5 gaattcattatataaccaaggttgttattaaacatttcatcttctacctaaacttcctta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 gaattcattatataaccaaggttgttattaaacatttcatcttctacctaaacttcctta 773
Query: 65 gtggtggaagcacaggtatgtgccactatgttttactataaccatagaaatcattatcag 124
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 772 gtggtggaagcacaggtatgtgccactctgttttactataaccatagaaatcattatcag 713
Query: 125 ccaaaaattcatgtggaaaaaaaatacaataaaatacttatatttgggattatatattct 184
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 ccaaaaattcacgtgg-aaaaaaatacaataaaatacttatatttgggattatatattct 654
Query: 185 tagtttttt-aaaaattatgtgttggcatgataaaattcacatatttcagctttgaatta 243
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 tagttttttaaaaaattatgtgttggcatgataaaattcacatatttcagctttgaatta 594
Query: 244 attatatgtattatgcaagagaatcacgagggtaagtgaactgtctttaatgatgtttaa 303
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 593 attatatgtattatgcaagagaatcacgagggtaaatgaactgtctttaatgatgtttaa 534
Query: 304 tgtctgcatcccagtacaaattttctttttttcgacacttccacaaaaggcatttttgat 363
|| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tgcctgcatcccagtacagactttctttttttcgacacttccacaaaaggcatttttgat 474
Query: 364 ttctttgggctctcggagtgtatacttcacactcagagcaagattggtggcacgatgatc 423
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 ttcttcgggctctcggagtgtatacttcacactcagagcaagattggtggcacgatgatc 414
Query: 424 ctgtgttggtctctgtgttggtctatggaatagatagaagattatcgtccctgtgattca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ctgtgttggtctctgtgttggtctatggaatagatagaagattatcgtccctgtgattca 354
Query: 484 gtgtaacaatattacagtagaaagaaaggggaatcgttgccttattatgagcttaattg 542
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 353 atgtaacaatattacagtagaaagaaaagggaatcgttgccttattatgagcttaattg 295
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space: 495824
Effective search space used: 495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no362_e03.g1 MSMg01no362_e03.g1 CHROMAT_FILE:
MSMg01no362_e03.g1 PHD_FILE: MSMg01no362_e03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:33 2005
(418 letters)
>mm_chr2_8961139_8961956
Length = 818
Score = 793 bits (410), Expect = 0.0
Identities = 416/418 (99%)
Strand = Plus / Plus
Query: 1 agaatttcttattcaaaattgcaaatggtcttatcgtacaaagatagcttgtaataaagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaatttcttattcaaaattgcaaatggtcttatcgtacaaagatagcttgtaataaagt 260
Query: 61 tattaatggtgtgtgtgccttgtgtactgtgtgtttatgtatgaatgtgtgtgtgtacat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tattaatggtgtgtgtgccttgtgtactgtgtgtttatgtatgaatgtgtgtgtgtacat 320
Query: 121 gtgtgtgagtctgtgtatatgtgtatgagtgtgtgtgctttcatgtatgcttgctgcaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtgtgtgagtctgtgtatatgtgtatgagtgtgtgtgctttcatgtatgcttgctgcaca 380
Query: 181 tgcaaatgggtgtgtatgtgtgtgtactgtgtacttgtacacaagggtatgtgtgcatgt 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 381 tgcaaatgggtgtgtatgtgtgtgtactgcgtacttgtacacaagggtatgtgtgcatgt 440
Query: 241 atgtgagtgtgtgcttctgtattcatgtttgtgcagtgaataaataaagacattgaaaac 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgtgagtgtgtgcttctgtattcatgtttgtgcagtgaataaataaagacattgaaaac 500
Query: 301 tgatttctgttcttactaaagaatgatgcatgctgttgcatacagaaccatttaaaacag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgatttctgttcttactaaagaatgatgcatgctgttgcatacagaaccatttaaaacag 560
Query: 361 tatggtcaagcctggagcattccataatgcaggaaagaagctctgaactctaaaagca 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatggtcaagcctggagcattccataatgcaggaaagaagctctgaactctaaaagca 618
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space: 330881
Effective search space used: 330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
