BAC Information

Click to search

BAC

Clone NameMSMg01-362F18
Chromosome2 (Build37)
Map Location 160,502,133 - 160,502,605
singlet/doubletsinglet
Overlap geneTop1
Upstream geneLOC100043689, Gm826, Mafb, LOC100043892
Downstream genePlcg1, Zhx3, Lpin3, Emilin3, Chd6, LOC100043693, LOC100043694, LOC383769, LOC629655, LOC383770, Ptprt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362F18.T7 (MSMg01no362_f18.b1)MSMg01-362F18.TJ (MSMg01no362_f18.g1)
ACCAG471063AG471064
length860773
length of high quality
(start - end)		77 (47 - 123)468 (79 - 546)
definitionCHROMAT_FILE: MSMg01no362_f18.b1 PHD_FILE: MSMg01no362_f18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:41 2005CHROMAT_FILE: MSMg01no362_f18.g1 PHD_FILE: MSMg01no362_f18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:57:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGCAACATTTGATTTATGAAAATGTGTAGAAAGCAATGCAGTTG
TATTTTGGGGGGTGGGGGGTGCCCCCTTCTCTCCCCCCCCCCTCTTCCCT
CATCTTTTTTCCCCTTCCTGTGTCACCTTTCTTCTTATTGCTTCCCTCCC
CTTTCTTTCCCCCCTCCACCCCNCTCTCCCCTCCTTCCTTTTCTTTTTCT
TATTGTCCCCCCCCCCCCTTCTTTTTCTCCACCCCCATCTTTTTTATAAT
TATCACACCCTCATCTTTTTTTTCTACACCTCTTCACCCCCTCCCACCGA
CCCCCCCCCCCTCTTTCCCCCCCTTCTCCCCCTTTTTTCTCTCTCCCCTT
ATGCCCTTTTCTTTTCCCCCTCTCCCCCCCCACCCCTCTCCCGACCCCTC
TATCGCCCCTTCTTTCTTACTCCCTTCTATTCCCCTCCCTTTATTCCCCC
CTTTATCCCTTCTAATTTCCCCCCTCCTCCTTCCCACCCTTTTCTCCCTC
CCCCCTTCTCTTCCCTTTTTTCTACCCCCCCCCCCCCTTTTTTCACCTTC
CTATTCTCCCCCTCCCTTTCCTCTCCCTCTACCTCCCCCCCCCCCTTCAC
ACATTTTTTATCTTCTCAACCCACTCACTCTTTTCCTACCCCCATTCCGC
TTTCTCTATTCTCTCACTTCCTTTTCATCTCTTCTCATAACCTCCTTATT
CACCTACACTGCATTTATCACAACCCTCTCTCAACCCTCTCTTTTATACT
TCCTCCTCTCCTTTCCCCTCACCCTCCGCTTTTTCTAGTTCTTTTCTTCT
TCCCCCTCTN

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXACTACATCCAAGGTGGGCAAGT
GTCCTTGTGATTTTGCTTAGTAGCCTAATGATGATGGACATTCAGCAGCC
GCTATGCTTTAGAGCCTTTTGAAAACTAGCTGCTGTACTATTGTCTGGGA
GACAACTTAAAGTTACCCGGAATTCTTTTATTTAAAGCATTTAAGCTTTA
TTTTGATGCCTGCTTTCCTTGTAAACACATTAATTTCTTTCCTTCTGTAT
TGTTAAAGCCTACTCATTCTCTTATAGGAGTGCCTGAGATGCCATTGTCT
GTCACCCTGTCTGCTGCTTTGCATAGTTGGCAAATATTAGTGGCTAAGTT
CTCTTCTCAGAAGATGAGCAGATTCTACCTAATAGTGTTTGGTTTTTGTT
TGCTTTGTTTGGGAAGAATAGAATAGAAGTAATTGAATGGTTAATTTCAT
GACTGGAGACAAACTGCCTGAGTTGAACTCCTCATTTTCCCTGGACAAGG
TACTTAAGCATTCTGTGGCTTTAATTTCCAGAAGTGGCAAAGTTAAAATA
CCCACATTCATTCTCCGGGTTTGGTGGAACCAGAAGGGGAAAATATTAAC
TCTGACCTCCCTCGCCACTTCGTCAAACACCCTCTCTCGCCTCTACTCGA
ACCTTCTACTTCTTATGGTCTCCCCTTTCCACACTTTATCCCTCCCCTTT
TTTCCCCCTCTTCCCCTTTTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_f18.g1 MSMg01no362_f18.g1 CHROMAT_FILE:
MSMg01no362_f18.g1 PHD_FILE: MSMg01no362_f18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:42 2005
         (468 letters)



>mm_chr2_160501933_160502805
          Length = 873

 Score =  884 bits (457), Expect = 0.0
 Identities = 467/473 (98%), Gaps = 5/473 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   actacatccaaggtgggcaagtgtccttgtgattttgcttagtagcctaatgatgatgga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actacatccaaggtgggcaagtgtccttgtgattttgcttagtagcctaatgatgatgga 260

                                                                       
Query: 61  cattcagcagccgctatgctttagagccttttgaaaactagctgctgtactattgtctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cattcagcagccgctatgctttagagccttttgaaaactagctgctgtactattgtctgg 320

                                                                       
Query: 121 gagacaacttaaagttacccggaattcttttatttaaagcatttaagctttattttgatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagacaacttaaagttacccggaattcttttatttaaagcatttaagctttattttgatg 380

                                                                       
Query: 181 cctgctttccttgtaaacacattaatttctttccttctgtattgttaaagcctactcatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctgctttccttgtaaacacattaatttctttccttctgtattgttaaagcctactcatt 440

                                                                       
Query: 241 ctcttataggagtgcctgagatgccattgtctgtcaccctgtctgctgctttgcatagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcttataggagtgcctgagatgccattgtctgtcaccctgtctgctgctttgcatagtt 500

                                                                       
Query: 301 ggcaaatattagtggctaagttctcttctcagaagatgagcagattctacctaatagtgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggcaaatattagtggctaagttctcttctcagaagatgagcagattctacctaatagtgt 560

                                                                       
Query: 361 ttggtttttgtttgctttgtttgggaagaatagaatagaa-----gtaattgaatggtta 415
           ||||||||||||||||||||||||||||||||||||||||     ||||| |||||||||
Sbjct: 561 ttggtttttgtttgctttgtttgggaagaatagaatagaatagaagtaatagaatggtta 620

                                                                
Query: 416 atttcatgactggagacaaactgcctgagttgaactcctcattttccctggac 468
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atttcatgactggagacaaactgcctgagttgaactcctcattttccctggac 673


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 873
Length adjustment: 10
Effective length of query: 458
Effective length of database: 863
Effective search space:   395254
Effective search space used:   395254
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |