BAC Information

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BAC

Clone NameMSMg01-363H10
Chromosome2 (Build37)
Map Location 94,158,816 - 94,159,365
singlet/doubletsinglet
Overlap geneTtc17
Upstream geneTspan18, LOC100042789, LOC639658, Cd82, Alx4, Ext2, 2610203E10Rik, Gm1967, Gm1335, LOC620695, Alkbh3, Hsd17b12, E530001K10Rik
Downstream geneItpa-ps1, Api5, LOC100043259
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363H10.T7 (MSMg01no363_h10.b1)MSMg01-363H10.TJ (MSMg01no363_h10.g1)
ACCAG471897AG471898
length731785
length of high quality
(start - end)		589 (43 - 631)---
definitionCHROMAT_FILE: MSMg01no363_h10.b1 PHD_FILE: MSMg01no363_h10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:11 2005CHROMAT_FILE: MSMg01no363_h10.g1 PHD_FILE: MSMg01no363_h10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATGAAATTCCAGCCATCTTAACAGTGCTGCATAAAGGAAATGCCAAAC
CCAGAGTCCTGTGCCAGCAGAAGTACCCTTCAGAAGCTGGGCACAAATGT
AGATGTGTTCAGTTGATCAAAAACTGAGAAAATTTTCCACCAGTAGATCT
AAACTAAAATAAAATGGAAAGGAAGATCAGTAGGAAAATTACCTCAGGTA
GAAGTATGGATGTGCAAGAAATAACAGCAAAATTTAAAAATAACTACTTA
GTGACGTGGAGTGGCTGGGGCACCTGGGCACCTCACTCTGGGGACCATAT
AAAAATGTGAGGTAACAGTTACATAGGGACGAAAGAGCAATAAGTGAGGT
TTAAAGTCCCAACATTTACCTGGTGTCAATCAGACTGTAAGACTTACATG
TATACTTTAAGCCATAGGCTAACTAACTTCCAACATTATTTTAAGATGCA
GTTTAGCAGAAGGAAAATGGAATAGCATAAAGTGTTTGATTAAATTGAAG
GAAGACAAGAAAGGTAAGAACATGGACACATCAAACTAATAACACAGACC
CAGAAGCCACGTGTCATCAGCTTTCTAAACCCAGCCACTCCCTGCTTAGA
AGGGACACTTTAAACATCTGAATATGAACAGGTTGAAAGTGCAGATATGA
ACCTTGACATCTTACCAACCGTGACTTAGAG

NCCCAAGAAAGGTAAGCTGGCGGCGCTGTTCCCACATTTAGGACCATAGA
TTTCCGCGCAATCTTCCTTTGGGGGGAGCGACAACCACCCCTCACATCCC
CCCCCGTTGATGACAGGGCGCGCGCGCCCGGACCGCCTCACGTCGAGGGA
GAAAACTTCCATACTTACGGACCGATGACCCCGCGCAAGGCCCCAGAGCG
ACGGCGCCCCGATGCTTTTTTCTCGGGGCCCTCCACCGGGCCCCTACCTA
CCCCCACAGACCCCAAACGGGGCCCCCCTCTTTTTTTTTTATAACCCAGC
CACCATAGCTCCCCCCGCCACGAATTAGCTATCGTCTCCTTCCAGCTCCT
CCCCACCCTCCCCCCACCTCCCCCCCTCCCCGGTCCCGCCCATTCCCGCC
CCCCGCCCCGCCCGCCCCCTTCCCGCCCGCCACGCCGTTCCCCCCTCCGT
ACGCACACCCCGCTCTCCGCGCCCCCACGGCCCTACTCCCCCCCTAAATA
AGCCGCGGCACAGCACTAGGACCCAACTGTACGCCCCCCTAGCACCCAGG
CTTTCACCCTCCGAGCCCCTATCCAGGTTCCGGCACCAGCGTTCTACTTC
CGATAAATACTTCTCCCCACTCCCCCCAACTTGCCGACCCACCGGTAGCC
GCGCACCCCAAGTGGCCGCTGCCCTTACGCCACCGCCACCTCCCGCCCCA
CCTGCTTTAGCAAGAGTGACCTTGCTTACAAACCCTCATATATCATAATA
TGAAAGCACTTCCACATAGTATGCCGGTTCTATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_h10.b1 MSMg01no363_h10.b1 CHROMAT_FILE:
MSMg01no363_h10.b1 PHD_FILE: MSMg01no363_h10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:11 2005
         (589 letters)



>mm_chr2_94158377_94159365
          Length = 989

 Score = 1056 bits (546), Expect = 0.0
 Identities = 549/550 (99%)
 Strand = Plus / Minus

                                                                       
Query: 40  cataaaggaaatgccaaacccagagtcctgtgccagcagaagtacccttcagaagctggg 99
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 989 cataaaggaaatgccaaacccagagtcctgtgccagcagaagtacccttcagaagctggg 930

                                                                       
Query: 100 cacaaatgtagatgtgttcagttgatcaaaaactgagaaaattttccaccagtagatcta 159
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 929 cacaaatgtagatgtgttcagttgatcaaaaactgagaaaattttccaccagtagatcta 870

                                                                       
Query: 160 aactaaaataaaatggaaaggaagatcagtaggaaaattacctcaggtagaagtatggat 219
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 869 aactaaaataaaatggaaaggaagatcagtaggaaaattacctcaggtagaagtatggat 810

                                                                       
Query: 220 gtgcaagaaataacagcaaaatttaaaaataactacttagtgacgtggagtggctggggc 279
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 gtgcaagaaataacagcaaaatttaaaaataactacttagtgacgtggagtggctggggc 750

                                                                       
Query: 280 acctgggcacctcactctggggaccatataaaaatgtgaggtaacagttacatagggacg 339
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 acctgggcacctcactctggggaccatataaaaatgtgaggtaacagttacatagggacg 690

                                                                       
Query: 340 aaagagcaataagtgaggtttaaagtcccaacatttacctggtgtcaatcagactgtaag 399
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 aaagagcaataagtgaggtttaaagtcccaacatttacctggtgtcaatcagactgtaag 630

                                                                       
Query: 400 acttacatgtatactttaagccataggctaactaacttccaacattattttaagatgcag 459
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 acttacatgtatactttaagccataggctaactaacttccaacattattttaagatgcag 570

                                                                       
Query: 460 tttagcagaaggaaaatggaatagcataaagtgtttgattaaattgaaggaagacaagaa 519
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tttagcagaaggaaaatggaatagcataaagtgtttgattaaattgaaggaagacaagaa 510

                                                                       
Query: 520 aggtaagaacatggacacatcaaactaataacacagacccagaagccacgtgtcatcagc 579
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 aggtaagaacgtggacacatcaaactaataacacagacccagaagccacgtgtcatcagc 450

                     
Query: 580 tttctaaacc 589
           ||||||||||
Sbjct: 449 tttctaaacc 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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