Query= MSMg01no363_j23.b1 MSMg01no363_j23.b1 CHROMAT_FILE:
MSMg01no363_j23.b1 PHD_FILE: MSMg01no363_j23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:23 2005
(484 letters)
>mm_chr2_144646717_144647599
Length = 883
Score = 828 bits (428), Expect = 0.0
Identities = 467/480 (97%), Gaps = 1/480 (0%)
Strand = Plus / Plus
Query: 5 gaattctgttaagattacaatcccacctactatatgcagtcatgcctttccctaaagccg 64
|||||||||| |||| ||| |||||||||||||||||||||||||| ||||||||||||
Sbjct: 205 gaattctgttcagataacagtcccacctactatatgcagtcatgccattccctaaagcca 264
Query: 65 tctctagtatagaaaagcttttcaacatacctttgaatagacttcttgtcacagttgtcg 124
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 265 tctctagtatagaaaagcttttcaacatacctttgaatagacttcctgtcacagttgtcg 324
Query: 125 gtcttagaactaaaagatacatgggctacacacctattagaatagctaaaaacaaatgaa 184
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 325 gtcttagaactaaaagatacatgggctacacacctattagaatagttaaaaacaaatgaa 384
Query: 185 gcaactcccccacacctagccagaggtgtatgtgtttgccttcttgggctattataacaa 244
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gcaactcccacacacctagccagaggtgtatgtgtttgccttcttgggctattataacaa 444
Query: 245 aatgccatatcttgggcagcctatgcagtagaaatgtgtttcttataagcctaaaagttg 304
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 445 aatgtcatatcttgggcagcctatgcagtaaaaatgtgtttcttataagcctaaa-gttg 503
Query: 305 ggaagcccaaggtcaaaggaactccatgacagcaattctaagctataccattggtgagac 364
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 504 ggaagcccaaggtcaaaggaactccatgacagcaattctaagctatagcattggtgagac 563
Query: 365 gatccctgggtcctggaagaacgtaaagagataagaaagtgaacaattaaagccatgaga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gatccctgggtcctggaagaacgtaaagagataagaaagtgaacaattaaagccatgaga 623
Query: 425 aagagttaactcctcccaacatcagaaacccaattatcaggcctcaagaaaataatgaga 484
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 624 aagagttaactcctcccaacatcagaaacccaattatcaggcctcaagaaagtaatgaga 683
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 883
Length adjustment: 10
Effective length of query: 474
Effective length of database: 873
Effective search space: 413802
Effective search space used: 413802
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no363_j23.g1 MSMg01no363_j23.g1 CHROMAT_FILE:
MSMg01no363_j23.g1 PHD_FILE: MSMg01no363_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:24 2005
(535 letters)
>mm_chr2_144709204_144710138
Length = 935
Score = 706 bits (365), Expect = 0.0
Identities = 368/369 (99%)
Strand = Plus / Minus
Query: 1 ctaccttgagttttatgtatcatcatgaatatcatgggacatcataaagttgttcacctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ctaccttgagttttatgtatcatcatgaatatcatgggacatcataaagttgttcacctc 310
Query: 61 tcagagaatccatgtttctctttatgaaatgggaggtaaaaataggcaccaggtttgaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tcagagaatccatgtttctctttatgaaatgggaggtaaaaataggcaccaggtttgaat 250
Query: 121 aataggatatttgccttgtgtcaaagtacctccctcaccagatattattaacagtgactt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 aataggatatttgccttgtgtcaaagtacctccctcaccagatattattaacagtgactt 190
Query: 181 tacaagggagaaacctgaaaagtaccatgtgatcaagccatcaaagctagcccctccata 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 tacaagggagaaacctgaaaagtaccatgtgatcaagccatcaaagctagcccctccata 130
Query: 241 gcaccataaatcaacatcttgtactccctcacatgatgcttagagtagacaaggcctttc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 gcaccataaatcaacatcttgtactccctcacatgatgcttagagtagacaaggcctttc 70
Query: 301 catcagttcctgccaaaattgcacaacctgaatctaatcaaagggcaacatcagacaggg 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 69 catcagttcctgccaaaattgcacaacctgaatctaatcacagggcaacatcagacaggg 10
Query: 361 ccaaataaa 369
|||||||||
Sbjct: 9 ccaaataaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space: 485625
Effective search space used: 485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
