BAC Information

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BAC

Clone NameMSMg01-363K22
Chromosome2 (Build37)
Map Location 129,284,060 - 129,284,468
singlet/doubletsinglet
Overlap geneF830045P16Rik
Upstream geneLOC383791, LOC100043730, Gm355, Anapc1, Mertk, Tmem87b, 1600015H20Rik, Zc3h8, LOC100043735, LOC100043736, Zc3h6, LOC668894, Ttl, LOC100043738, Rpo1-2, Chchd5, LOC545461, LOC100043431, Slc20a1, A730036I17Rik, LOC671466, Ckap2l, Il1a, Il1b, OTTMUSG00000015529, LOC668896
Downstream geneSirpa, Pdyn, Ppia-ps2_1620.1, Stk35, Tgm3, AU015228, LOC100043438, Tgm6, Snrpb, Tmc2, Nol5a, Idh3b, Ebf4, LOC668899, Cpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363K22.T7 (MSMg01no363_k22.b1)MSMg01-363K22.TJ (MSMg01no363_k22.g1)
ACCAG472060AG472061
length775783
length of high quality
(start - end)
409 (128 - 536)---
definitionCHROMAT_FILE: MSMg01no363_k22.b1 PHD_FILE: MSMg01no363_k22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:28 2005CHROMAT_FILE: MSMg01no363_k22.g1 PHD_FILE: MSMg01no363_k22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGAACTA
GATTCCCACTAGCTACTTAGTGCACATTCAATAGATACTAATGGAGTGAA
TACACGAATGAGGAACTGAGTAAGTAAATGATGTTTCCTGCTTCTGTATG
ACCTGTGATACATTGCCTACTACCCTCTCTAAGGAGCTCAAGTGGAGAGA
AGATGCAAGGACCTGCAGTTGATCCGAGACTCCTGCTCTTCACTCGCCCT
CCTCCATCCACCACAGATGTGCTCTCCCTGCACACTGCACACAGACTTGG
ATTGTTTAGCGATATTTCAGACTCAAGATACTGAATCTCAAATGATCTCT
TCTTACAACCAAAAGGCAATTTAATGATGAGGAAATGAATGTTCACTCTG
TCTCTGGCCATGGTCAATCCTTAATTTTCCAGTTCTGACTACCAACTAGA
ATTTCTGGAAGCATAATTTAATTTTAACAGACACAAAACTTGTATTACTG
GACTGTTGAAAAGAATTTTTCCTATCTTGAAATGTGATTTAAAACAGTAT
AAAACACCTCTAGATTCACTATAACATTTTGTAAAATATAACATCTTGTC
CATATCTTCTTCAATTTTTTTTTTTAATATTGCCCCGAATTTGCTGGTTT
TCTTTCTTAATCATGGGTTTATACTGCTATGACATAAACATAACCTTTTA
ACAGCATAATAGGCTTTCCGGTTTTATTCTTTTTAAAAACCCTGATATCC
CATTTGCCATTTTTGAAATTTCTTT
NCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTGGCCGCCTGCTCTACAGAGCGA
GATCGAGGACAGCTAGNGCTACACACAATAACCCTGCTTTGAAAACACTA
CCTATCCAACTAACTAACTAACTAACTAAATAACTAACTAGATCGCCTCT
ACAGAAGGATAAGAGATCAGGGAGTACTTAGAAAGAAGGAGACTCATATA
CACGTGACTCATCAGGGCGGTAATTCCCGACGCATAAGAAGAACACACAG
CACGAGCTGCTAAGATGTTACATACAATAACTTGCCGCTAGAAATTCTTC
CCACAGTATGAATACACGCTGAAGGGCGAGACAGTGCCACTTTACCAGCA
TAAGATTGCATGCGTCCTTATCAAACATGTGTGAGTTTACAACTATCATG
TTATTTTGTTTCACCTATTTATAACTTTCTTTTCTTTTCCTTTCCCTACC
TTTCCTTTCTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTT
CCTTACTTCCAAACGTGCTTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XTTTTATTTTTTTTTAAAAGGTGGGAATAATTGATTATTCCGAAATCTCC
CGGGGGTGGTCCTTTATACCCCTCTTTTGGGAGGATATTTCCTCTTCTCC
TCTTTCTTTAGGCCCCCCGCAACCCGCTCGTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_k22.b1 MSMg01no363_k22.b1 CHROMAT_FILE:
MSMg01no363_k22.b1 PHD_FILE: MSMg01no363_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:28 2005
         (409 letters)



>mm_chr2_129283860_129284670
          Length = 811

 Score =  756 bits (391), Expect = 0.0
 Identities = 404/409 (98%), Gaps = 2/409 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgatgtttcctgcttctgtatgacctgtgatacattgcctactaccctctctaaggagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 atgatgtttcctgcttctgtatgacctgtgatacattgcctactaccctctctaaggagc 550

                                                                       
Query: 61  tcaagtggagagaagatgcaaggacctgcagttgatccgagactcctgctcttcactcgc 120
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 549 tcaagtggagagaagatgcaaggccctgcagttgatccgagactcctgctcttcactcgc 490

                                                                       
Query: 121 cctcctccatccaccacagatgtgctctccctgcacactgcacacagact--tggattgt 178
           ||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||
Sbjct: 489 cctcctccatccaccacagatgtgctccccctgcacactgcacacagacttgtggattgt 430

                                                                       
Query: 179 ttagcgatatttcagactcaagatactgaatctcaaatgatctcttcttacaaccaaaag 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ttagcgatatttcagactcaagatactgaatctcaaatgatctcttcttacaaccaaaag 370

                                                                       
Query: 239 gcaatttaatgatgaggaaatgaatgttcactctgtctctggccatggtcaatccttaat 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gcaatttaatgatgaggaaatgaatgttcactctgtctctggccatggtcaatccttaat 310

                                                                       
Query: 299 tttccagttctgactaccaactagaatttctggaagcataatttaattttaacagacaca 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tttccagttctgactaccaactagaatttctggaagcataatttaattttaacagacaca 250

                                                            
Query: 359 aaacttgtattactggactgttgaaaagaatttttcctatcttgaaatg 407
           ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 aaactcgtattactggactgttgaaaagaatttttcctatcttgaaatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 811
Length adjustment: 9
Effective length of query: 400
Effective length of database: 802
Effective search space:   320800
Effective search space used:   320800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)