BAC Information

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BAC

Clone NameMSMg01-363L19
Chromosome2 (Build37)
Map Location 57,169,382 - 57,169,502
singlet/doubletsinglet
Overlap geneGpd2
Upstream geneLOC227920, Nr4a2, LOC100041900, LOC100042910
Downstream geneLOC271788, Galnt5, A330104H05Rik, LOC667026, Pscdbp, LOC100042926, Acvr1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363L19.T7 (MSMg01no363_l19.b1)MSMg01-363L19.TJ (MSMg01no363_l19.g1)
ACCAG472102AG472103
length762774
length of high quality
(start - end)		587 (33 - 619)122 (77 - 198)
definitionCHROMAT_FILE: MSMg01no363_l19.b1 PHD_FILE: MSMg01no363_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:33 2005CHROMAT_FILE: MSMg01no363_l19.g1 PHD_FILE: MSMg01no363_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTATAAA
TTTTGGATATTAATTCTCTGTCAAATGTAAAGTTGGTGAAGACTCCTTCC
CAATCTGTAGGTTGTTGTTATGTTCTATTGACAGTGCCTTTGCTTTACAT
GAGCAATGCAGTTTCATGAGGTCCCATTTATCAATTGTTGATCTTAGAGC
CTGAGCCATTGGTGTTCTAATCAGGCAATTTTCTCATGTATGAATACATT
CAAGGCTGTTTCCCAGTATTTTTTCTATGAGATTTAGTGTGTCAAACTTA
TGTTGAGGTCCTTGATCCACTGGGACTTGATTTTTATACAGGGTGACAAA
TATGGTTCTATTTGCATTCTTCTACAGGTAGACATCCAGTTAGACCAGCA
GCATTTGTTGAAAATACTTTTTTTTCATTGTATGTTTTTTGGCTTCTTTT
TCAAAAATCAAGTGTCCTTAGGTGTGTAGATTTATTTCTGGGTCTCTGAT
TTGATTGCATTGATCAATGTGTCTGTTTCTAGACCAATACCATCAGTTTT
TATCACTATTGCTCTGTAAAACAGCTTGAGATCAGGAATAGTGATTCCTC
CCAAATCCCATTCATTGTTCAATGTTGTTTTGCTATTCTGGGTTTTTTAT
ATATATATTTTTTTCCATATGAAGTTGATAATTGTTCTTTAAGGGTCTAT
AAAAATTGTGTTGGATTTTGATGAAGTTTGCACTGAATCTGCAGAATGCT
TTTGGTAAAATN

NTTTTTCATGACANGNNNAGCCTGGNGGNCGCCTTTTTCAAACXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATTTGTAAATCAGACAAAATATT
CCAGAGGTGGGGGGACATGCCTACAACCTCAGTGTTCAAAGGTGAAGTTT
GAAGGTTGCAAATAAAAAGTCATTACGGGGAACATATACCTTTTTTTTCT
TTGTAATACCAAAACATAGAACCATCTGGGGGTGGGTGTGTGTGGGGCTG
GGGGGGGGGGGGGTGGGGAGGGGGGGGGCGGGGGGGGGTGGGGGGGGGGG
GGGGCTGCTGGGGNNNNAAAAAANNAAAATTTTTTTAAANAAANNAGAAA
AGAAAGAATGAAAAAGGGGAACCNNNNNAANCTAAGNAAAAAAAAAAAAA
NTGGGNGGTTAAAAAAATGTTCCCCTTTTTTATTTTTTGTTCCTGGGGGG
GGGGAAAACCNNNNNNNNAAAANAAANNNNAAAAAAAAAATTTTATTNNT
TGTCTTTTTGGGGGGGGGGGGGGGGGGCTAANAAANNNNNNNNNNNNNNT
ANNNNNNNNNNANNNNNNAAAANNNNAANANNNNNANNNNNANNANANAA
AAAAAATTTATAATTTTTTATTTTTTTTTTTNNNNTCTTTTNNNNNNNNT
NNNTNNNNNNANNNNNNNANAANNNANNNNAANNANAAAAAAAAAATTAA
AAAANNAAAAANNNNNNNNNNAANNAAANTTTTAAAAAAANANATTAATT
TTTATTTTATTTTTTATTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_l19.g1 MSMg01no363_l19.g1 CHROMAT_FILE:
MSMg01no363_l19.g1 PHD_FILE: MSMg01no363_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:33 2005
         (122 letters)



>mm_chr2_57169182_57169703
          Length = 522

 Score =  219 bits (113), Expect = 6e-62
 Identities = 119/121 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatttgtaaatcagacaaaatattccagaggtggggggacatgcctacaacctcagtgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatttgtaaatcagacaaaatattccagaggtggggggacatgcctacaacctcagtgtt 260

                                                                       
Query: 61  caaaggtgaagtttgaaggttgcaaataaaaagtcattacggggaacatatacctttttt 120
           ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 261 caaaggtgaagtttgaaggttgcaaataagaagtcattatggggaacatatacctttttt 320

            
Query: 121 t 121
           |
Sbjct: 321 t 321


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 122
Length of database: 522
Length adjustment: 8
Effective length of query: 114
Effective length of database: 514
Effective search space:    58596
Effective search space used:    58596
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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