BAC Information

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BAC

Clone NameMSMg01-363N05
Chromosome2 (Build37)
Map Location 133,904,384 - 133,904,658
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043785, A430048G15Rik, Bmp2
Downstream geneHao1, Txndc13, LOC627897, LOC433478, Plcb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363N05.T7 (MSMg01no363_n05.b1)MSMg01-363N05.TJ (MSMg01no363_n05.g1)
ACCAG472170AG472171
length752771
length of high quality
(start - end)
279 (39 - 317)519 (80 - 598)
definitionCHROMAT_FILE: MSMg01no363_n05.b1 PHD_FILE: MSMg01no363_n05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:40 2005CHROMAT_FILE: MSMg01no363_n05.g1 PHD_FILE: MSMg01no363_n05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCT
GCAGTATGCCTCCCCTCCAAAGTAGGTCTCTGAGAATGTAAATTGACACT
TCATCCCATTGCCTAGGACTAGAGAATCACCCTTGATAATCTATAAATCC
ACATGGGGAGACCATATGTTGAGCCATCCCAAATGAAGAAAAGTCACCCT
TATCACACAAAAGAGACCAAGGATGTCTTCGTTTCTGTTGGATTCTGTGT
GTATATAAATAAAAATTATTTATTTATGATTTCAGGGCCCTGGTCTGGAA
GCTAATCTTTGCCCTGGTCATTAGAACAGAGAGAAGAAAGATGGGGTGAG
GGAAGCTATTAAGGGAAGGGAAACCACTGATATATGTTTCTAAGGCTTCA
TATGTTTTCTCTTCCAGACCTTTCCCAAAATAACTTTGCCTTTCTGTAGA
AACAGAATTGTGACCCCTTTGTGCCAGCTTCTCTGGGCAGCCAGAACACC
CACTTCTTCTGTTTAATTCACAATTTGGTTTGTAATTTCCCACATACATT
AAACTGTGGTACTGTGTGATTTCAGGATGTTTTCATATCAAACTCTTATT
TAGTTGGTTCATCAGATCTTATGGCTCATAACACCCCAAGCTCTTCTGGG
TAGACCCATCTAAGAGTCCCCCAGTGCTATGATGCTCCTCACATGTGCAT
GGCCCACAGGAAAGCTTGGGATCCAAGGGAAACCTCCCCCACCGTTGTAT
CG
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCCATACCTAAACATGA
TAAAAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGTAAG
AAGCTGGAAGCATTCTGACTAAAATCAGGGACTAGACAAGGCTGCCCACT
TTCTCCCTACCTATTCAACATTGTGCTTGAAGTCCTAGCCAGAGCAATTC
AGCAACAAAAGGAGATCAAGGGAATAAAAATCGCAAAGGAAGAAGTCGAA
ATATCACTTTTTGCAGATGATATGATAGTGCATATATAAGTGACCCTAAA
AATTCCACTAGAGGACTCCTAAACCTGATAAACAGCTTCATTGCAGTAGA
TGGATATAAAATTAACTCAAACAAGTCAATGGCCTTTCTCTACACAAAGG
ATAAACAGGCTGAAAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTC
ACAAATAATATAAAAATACCTTGGCGTGACTCTCACTAAGGAAGTGAAAG
ATTTGTACAAGAACTTCAAGTCTCTGAAGAAAGAAATTAAAGAAGATCTC
AGAAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAACATTTG
TAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGGCATAAAGG
GCAATCTGGCAATTTATCTGGGAATATAAAAAACCCTAGAATAGCAAAAA
TCCTTCTCCAAGATAAAAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_n05.b1 MSMg01no363_n05.b1 CHROMAT_FILE:
MSMg01no363_n05.b1 PHD_FILE: MSMg01no363_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:40 2005
         (279 letters)



>mm_chr2_133904246_133904924
          Length = 679

 Score =  509 bits (263), Expect = e-148
 Identities = 272/275 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgcagtatgcctcccctccaaagtaggtctctgagaatgtaaattgacacttc 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gaattcctgcagtatggctcccctccaaagtaggtctctgagaatgtaaattgacacttc 354

                                                                       
Query: 65  atcccattgcctaggactagagaatcacccttgataatctataaatccacatggggagac 124
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 353 atcccattgcctaggactagagaatcacccgtgataatctataaatccacatggggagac 294

                                                                       
Query: 125 catatgttgagccatcccaaatgaagaaaagtcacccttatcacacaaaagagaccaagg 184
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 293 catatgttgagccatcccaaatgaagaaaagtcacccttatcacataaaagagaccaagg 234

                                                                       
Query: 185 atgtcttcgtttctgttggattctgtgtgtatataaataaaaattatttatttatgattt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 atgtcttcgtttctgttggattctgtgtgtatataaataaaaattatttatttatgattt 174

                                              
Query: 245 cagggccctggtctggaagctaatctttgccctgg 279
           |||||||||||||||||||||||||||||||||||
Sbjct: 173 cagggccctggtctggaagctaatctttgccctgg 139


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)