BAC Information

Click to search

BAC

Clone NameMSMg01-364C22
Chromosome2 (Build37)
Map Location 114,176,784 - 114,177,083
singlet/doubletsinglet
Overlap genenone
Upstream geneFmn1, Grem1, LOC100043520, Scg5, Arhgap11a, LOC100043526, Gja9, A530058N18Rik, Actc1, Aqr, Zfp770
Downstream geneAtpbd4, LOC100043219, LOC100043222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364C22.T7 (MSMg01no364_c22.b1)MSMg01-364C22.TJ (MSMg01no364_c22.g1)
ACCAG472441AG472442
length780761
length of high quality
(start - end)		452 (53 - 504)383 (85 - 467)
definitionCHROMAT_FILE: MSMg01no364_c22.b1 PHD_FILE: MSMg01no364_c22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:11 2005CHROMAT_FILE: MSMg01no364_c22.g1 PHD_FILE: MSMg01no364_c22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCCCCCTTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAGATCCA
CCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCATGCGCCACCAGGCC
CGGCTGACCAATTATTTTCTAACAGATATAAATGTACCAAAAAAAATTGT
CTCTGTAAGAATCAGAACAGATAGGGACATTTCTCCTCAGACCCTAGCTG
TTGAGATTCCTTCTGCACTCAGCCCAACAGTTACCTAGCAACAGCCAGGT
AGGCCTGGCTTGCTATAAAAGTGACTGCTTGGCCTTTCTGATTCTCTCTG
ACTCTGAAGCTTTTCTCTTTCTGACCCTCTTCCCGCCCTCACCACTGTTC
CTGGCGGCCTTTTCTCTTCTTTCTCTCCCCCTCTCTTTCTCTGCCTCTAC
TCTCTGCTCAACTCTCCTTCCCATACCCCCAAATAAACTCTATACTATAC
ACTTTTTATTTGCCTTATACCTCACGGAAACAGATGCCTCAGCATGGGTC
CTCTGCAGAACCCCTTCCCCCTGTACCAGAACCCGCTCTATAAAAACATC
CTTTGATTTATGAACACACCACTTGGTTTTCTGGCTTAGAAGGGAAAGTT
GAAAAAGGGACCCAAAACCTAAAAAAAAAAGTAAAGGGCTGGGTGATAAA
CCGCCTCTTTTCTACCTCTCCTTTCTCTTTTTGCTTCCCTCCTTATTATC
TCCCTTTTTATCTACCTTCTCCCTAAGTTA

NNNNNNNCCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTAGTCCTGCCCTTT
ACCATCTAGCTCTTAATAATATTTCCACTCCCCATGCGTGATGTATTCTG
TGCATTAGAGAAAGTGGTAGAAGTATTCTGTGTGGGACTGAGCTCTCAAC
TGTCACTTACTCTCAGCAACTTGAGTAGCAGATTATTACAAAAGGAAAAC
TTCTCTGGGTTATACATTTTCCTATGAGTATAAACATAAAGATTTTAAAG
ATGGCTTGGTTTTGCATCTTTTTACCTAAACAATAGTTGGAGGTTTCTCC
CTAGGGCCCAAGACATCATCATTTTTGGATATTTGATTGGCACGGATTTA
TTCCTGTGGTGCTGTCTGCAAATCCATTTCTGGGGGAGTTGACTATTAGC
ACACAGCTATGCCACTGTTGCACAAGTGGGTGCTTCTTGCCTAAAAGTTT
GGTGTTTTAATTCCCAGCATTCCCTCTTTGGCAAGGACACTGGATGCCTT
TTCTTCCAGCAATCCATGGATCACCTTCTCGAGCTTGGGAAACCTCCTAC
TCACAGGAAATTTCCCGCTTGGTTATATGTGGTTTTCTCTAAATTCTTTT
GTTTATTTGTCTTTCCCATCTTTTTTTCTTCTCCTTCGAATATTTTGTCT
CTCATATTTTTCCATTCCTTCTATTTTTTTTTTCGTTATTGTCCGTTCTC
CTTCTGTTCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_c22.g1 MSMg01no364_c22.g1 CHROMAT_FILE:
MSMg01no364_c22.g1 PHD_FILE: MSMg01no364_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:11 2005
         (383 letters)



>mm_chr2_114176301_114177083
          Length = 783

 Score =  549 bits (284), Expect = e-161
 Identities = 296/300 (98%)
 Strand = Plus / Minus

                                                                       
Query: 84  tagaagtattctgtgtgggactgagctctcaactgtcacttactctcagcaacttgagta 143
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 tagaagtattctgtgtgggactgagctctcaactgtcacttactctcagcaacttgagta 724

                                                                       
Query: 144 gcagattattacaaaaggaaaacttctctgggttatacattttcctatgagtataaacat 203
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 gcagattattacaaaaggaaaacttctctgggttatacattttcctatgagtataaacat 664

                                                                       
Query: 204 aaagattttaaagatggcttggttttgcatctttttacctaaacaatagttggaggtttc 263
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 663 aaagattttaaagatggcttggttttgcatctttttacctaaacaatagttggaggttcc 604

                                                                       
Query: 264 tccctagggcccaagacatcatcatttttggatatttgattggcacggatttattcctgt 323
           |||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||
Sbjct: 603 tccctagggcccaagacatcatcattcttgggtatttgattggcatggatttattcctgt 544

                                                                       
Query: 324 ggtgctgtctgcaaatccatttctgggggagttgactattagcacacagctatgccactg 383
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 ggtgctgtctgcaaatccatttctgggggagttgactattagcacacagctatgccactg 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space:   289476
Effective search space used:   289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |