BAC Information

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BAC

Clone NameMSMg01-364G09
Chromosome2 (Build37)
Map Location 108,853,675 - 108,854,100
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043078, LOC668790, LOC623003, LOC100043423, LOC623031
Downstream geneMett5d1, Kif18a, Bdnf, LOC100043427, Lin7c, Lgr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364G09.T7 (MSMg01no364_g09.b1)MSMg01-364G09.TJ (MSMg01no364_g09.g1)
ACCAG472606AG472607
length792865
length of high quality
(start - end)
430 (46 - 475)63 (75 - 137)
definitionCHROMAT_FILE: MSMg01no364_g09.b1 PHD_FILE: MSMg01no364_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:29 2005CHROMAT_FILE: MSMg01no364_g09.g1 PHD_FILE: MSMg01no364_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCG
CGGAATTCATAGACGATAGCTGTCATAGTAGATGTGTGCATGACGCTTGG
TAGTAATTTACCACTCTAACTGTGGTCCTAAGTATATAGGTATATTATAT
CCTACTAATATCTAGATTTGTTTCAATCAAACACAAAAAAGTTGAAGTTA
GACAAATTTTGACAAAAATACTCATGCACTTCTGTTATTTCTTTTTCATC
CCTCATGCTCCAATGAAAGTATACCTGTGATACTCTACTGAAGGAAATCA
GAAGAGAAATGTTGTTCTAGCAGAATCTGTAGTGGACCACACTATCACAA
GTGACTTGATAGCTAACTTGTGGCTAAAGAAGCCCAGGAAACATTGTGTG
TGCTTACCTTAGAGCCGTAAAATCATTCAACCATTCTACAGACAAAAGAA
AAACAAAGGACACTAAGTATAAGGTAGTATGTTACCCAGAAAGAATTAAC
TGATAATACAGTGTATGAAGTAGAAACTAGCTGCNCAGAGTACTGTAAGT
TCATTTATATAAGATTAAGGAGGGCAATGTATAGACTATTTCCTTAATTA
ACTGATTTGATCTTTTAACGAAATTTGGAAAAAAACAGCCCATTTAAACT
TCTCTATTTACTTATTAGCTTTTAACACTAATAAATGCGTTTAAATAAAC
GAATCCCTGGCCCCATCTATTGACTCTCTAAGGTTAATAAATGTGTTACT
TTTGTTCTGTCTACACAAAAACAAAAATTTCCCTTCGTGCGN
NCCATACAGTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCGACTTACATGGAAGGACACAAATCTGG
GGTTGTGGGAAATGAAACCTCTATGTTTGTTTGTTTGTTTGCTTGTTTGT
CCGCCCGCCCTCCCCCCCCCCCCCCCCCCTCCCCTCCCCCCCCCCCTCCC
TCCCTTCTCCCCCCCTCCCCCCNTTCCCCCCCCCCCCCCCCCCCCCCCCC
TCTCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCTTCTTCTTCTCCCCCCCACCCCCCCTCTCCC
TCCTCCCCTCTTTTCCTCCCCCCCCCCCCTCTCCCCCCCCCCCCCCCCTC
CCCCCTCCCCCCCCCCCCCACCCCCCCCCCCAATCTACTCACCCACACCC
CTTCCCCCCCCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCACCCCCCCCT
CCTCACCCTCCCCCTCCCCCCCCCCCTCACCCCACCCTCACCTCCCCCCC
CCCCCCCCCTCCCCCTCTTCCCCCCCCCCCCCCACCATCACCCCCCCCAT
CACCCCCCCCCCCCCCCTCCCCCCCCCCCACCCTCACCCTCCCCCCTCCC
ACCTCTCCACCACACCCCCCCCACCCTCCCCCCCCCCTTCCCCCTCCCCC
CCCCCTCCCCCTCACCCCCTCCCCCCCCCCCCCCCCCCTCCACCCCAATA
TCCTCTCCACCCCACACCTCTCCCTCCCCCTCCCCCATTACCTTCCCACC
CCCCCCCCCCCCCCCCCCCCCCTCCCACCCCCCTCCCACCCCCCCTCCCC
CCCCCCCCCCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_g09.b1 MSMg01no364_g09.b1 CHROMAT_FILE:
MSMg01no364_g09.b1 PHD_FILE: MSMg01no364_g09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:29 2005
         (430 letters)



>mm_chr2_108853468_108854300
          Length = 833

 Score =  785 bits (406), Expect = 0.0
 Identities = 420/426 (98%), Gaps = 3/426 (0%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattcatagacgatagctgtcatagtagatgtgtgcatgacgcttggtagtaatttacc 67
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcatagacgagagttgtcatagtagatgtgtgcatgacgcttggtagtaatttacc 267

                                                                       
Query: 68  actctaactgtggtcctaagtatataggtatattatatcctactaatatctagatttgtt 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 actctaactgtggtcctaagtatataggtatattatatcctactaatatctagatttgtt 327

                                                                       
Query: 128 tcaatcaaacacaaaaaagttgaagttagacaaattttgacaaaaatactcatgcacttc 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tcaatcaaacacaaaaaagttgaagttagacaaattttgacaaaaatactcatgcacttc 387

                                                                       
Query: 188 tgttatttctttttcatccctcatgctccaatgaaagtatacctgtgatactctactgaa 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tgttatttctttttcatccctcatgctccaatgaaagtatacctgtgatactctactgaa 447

                                                                       
Query: 248 ggaaatcagaagagaaatgttgttctagcagaatctgtagtggaccacactatcacaagt 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ggaaatcagaagagaaatgttgttctagcagaatctgtagtggaccacactatcacaagt 507

                                                                       
Query: 308 gacttgatagctaactt---gtggctaaagaagcccaggaaacattgtgtgtgcttacct 364
           ||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gacttgatagctaactgaaggtggctaaagaagcccaggaaacattgtgtgtgcttacct 567

                                                                       
Query: 365 tagagccgtaaaatcattcaaccattctacagacaaaagaaaaacaaaggacactaagta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tagagccgtaaaatcattcaaccattctacagacaaaagaaaaacaaaggacactaagta 627

                 
Query: 425 taaggt 430
           ||||||
Sbjct: 628 taaggt 633


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 833
Length adjustment: 9
Effective length of query: 421
Effective length of database: 824
Effective search space:   346904
Effective search space used:   346904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)