BAC Information

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BAC

Clone NameMSMg01-364H13
Chromosome2 (Build37)
Map Location 7,238,734 - 7,239,152
singlet/doubletsinglet
Overlap genenone
Upstream gene1700014B07Rik, Usp6nl, LOC100040387, Cugbp2, LOC100040659
Downstream geneLOC100040648, LOC672230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364H13.T7 (MSMg01no364_h13.b1)MSMg01-364H13.TJ (MSMg01no364_h13.g1)
ACCAG472661AG472662
length796760
length of high quality
(start - end)		422 (50 - 471)447 (79 - 525)
definitionCHROMAT_FILE: MSMg01no364_h13.b1 PHD_FILE: MSMg01no364_h13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:35 2005CHROMAT_FILE: MSMg01no364_h13.g1 PHD_FILE: MSMg01no364_h13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTATTTTCTCCCTTCCATTCATCACTAGGCTATGTTGTTT
GTAACAATGGCCTGCCATTTAATTTCTCTCCTCTTAGCCTAGCTGCTCTT
CAACCCAAGGACTCGCCACCAGGAAGTATTATCTCCCAGTTTGGAGAGGC
ACGTGGCTTTCCCAAATGGACTCTCCTTTGCACTGATAAACAACAATAAC
AAAAGCCTCATGTCAGAGAGACAAGGCAAATGCTTTGTCTGCCACCACCC
ACTCCTCTTTTGTTTCCCAGGAGGGCTTTGCTCTTTATTACATTCTGCAT
GCTTCTCTCTGGGGCTCTGCAGATGTGCAATCTTAAAAGTAGGGTATTTA
AAAATAATAGTAAAAAGTCTCCACCCTGCAAATTGCAGGGCTTTATGCTG
GAGCAGCATGCGGCTCCCTGAAGAGCTGTGTTATCAGGAGTTTGATGGGT
TATGTTGATTAAAACGCTCTGGATGGGAGAAAAAAGGGTGGCCCAAGATA
TGGAAATTAATTTCTCCCCCTGGGAAGGACTGTAAAAAAAACCCCCCTGG
GCCGGGGCCCTTTTTTCTAGAAATCGCCGCTGTCTCAGATTCAGTTTCTC
GAATAGCTGTTTCTTCTTCCCTAAGCTAAATTTTTTGTGCCGCGTGTTGC
GCGGGTACTCCTTTTCTACTCTCCTATCTTTTCCCGCGGTCACCTCCTAT
CCTTCATTTATTACCCCCCGGATGCGTCTTTTTCTCNCTCTTACTG

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTACCTCTGAGCCCCAT
TTTTTAATGGGGTTATTTGATTTTCTGGAGTCCACCTTCTTGAGTTCTTT
ATATATATTGGATATTAGTCCCCTATCTGATTTAGGATAGGAAAAGATCC
TTTCCCAATATGTTGGTGGCCTTTTTGCCTTATTAAAGGTGTCTTTTGCC
TTACAGAAGCTTTGCAATTTTATGAGGTCCCATTTGTTGATTCTTGATCT
TACAGCACAAGCAATGGCTGTTCTATTCATGAATTTTCCCCCAGTAGCCA
TATCTTTGAGGCTTTTCTCCACTTTCTCCTCTATAAGTTTCACTGTCTCT
GGTTTTAAATGGAGTTCCTTGATCCACATAGATTTGACCTTAGTACAAGA
AGATAAGAATGGATCAACTCGAATTCTTCTACATGATAGCCACCAGATGT
GCCAGCACCATTTGTTGAAAATGCTATCTTTTTTCCACTGGATGGTTTTA
GCTTCCTTGGTCAAGATCCAGTGACCATAGGTGGATGGTTCATTTCTGGG
TCTCAATTCCGTTCCTTGGGCCACTTGGGTGCCCCAAAACAGAACCCCGT
GTTTTTTTCCATTTGTTCGGTGAGAAGTTTTCGGTACAACATGGCCTCCC
CCAAGTTTTTTTTTCTAGAAACCTTTTATGTTCTCTTTGTTTTTTCTCTT
ACTATTATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_h13.b1 MSMg01no364_h13.b1 CHROMAT_FILE:
MSMg01no364_h13.b1 PHD_FILE: MSMg01no364_h13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:35 2005
         (422 letters)



>mm_chr2_7238530_7239352
          Length = 823

 Score =  779 bits (403), Expect = 0.0
 Identities = 415/419 (99%), Gaps = 1/419 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttattttctcccttcca-ttcatcactaggctatgttgtttgtaacaatggcc 63
           ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttatttcctcccttccaattcatcactaggctatgttgtttgtaacaatggcc 264

                                                                       
Query: 64  tgccatttaatttctctcctcttagcctagctgctcttcaacccaaggactcgccaccag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgccatttaatttctctcctcttagcctagctgctcttcaacccaaggactcgccaccag 324

                                                                       
Query: 124 gaagtattatctcccagtttggagaggcacgtggctttcccaaatggactctcctttgca 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaagtattatctcccagtttggagaggcacgtggctttcccaaatggactctcctttgca 384

                                                                       
Query: 184 ctgataaacaacaataacaaaagcctcatgtcagagagacaaggcaaatgctttgtctgc 243
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgataaacaacaacaacaaaagcctcatgtcagagagacaaggcaaatgctttgtctgc 444

                                                                       
Query: 244 caccacccactcctcttttgtttcccaggagggctttgctctttattacattctgcatgc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caccacccactcctcttttgtttcccaggagggctttgctctttattacattctgcatgc 504

                                                                       
Query: 304 ttctctctggggctctgcagatgtgcaatcttaaaagtagggtatttaaaaataatagta 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttctctctggggctctgcagatgtgcaatcttaaaagtagggtatttaaaaataatagta 564

                                                                      
Query: 364 aaaagtctccaccctgcaaattgcagggctttatgctggagcagcatgcggctccctga 422
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 565 aaaagtctccaccctgcaaattgcagggctttatgctggagcagcatgtggctccctga 623


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 823
Length adjustment: 9
Effective length of query: 413
Effective length of database: 814
Effective search space:   336182
Effective search space used:   336182
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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