BAC Information

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BAC

Clone NameMSMg01-364N10
Chromosome2 (Build37)
Map Location 165,941,837 - 165,942,081
singlet/doubletsinglet
Overlap geneSulf2
Upstream geneCdh22, Slc35c2, Elmo2, Gm1008, Zfp334, 4833422F24Rik, Slc13a3, 2810408M09Rik, Slc2a10, Eya2, Prkcbp1, LOC546780, Ncoa3
Downstream geneLOC670775, Ppia-ps2_2197.1, BC067047, Trp53rk, Arfgef2, LOC670802, Cse1l, Stau1, LOC383774, Ddx27, AI481105, 1500012F01Rik, LOC668950, Kcnb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364N10.T7 (MSMg01no364_n10.b1)MSMg01-364N10.TJ (MSMg01no364_n10.g1)
ACCAG472938AG472939
length836840
length of high quality
(start - end)
245 (72 - 316)86 (77 - 162)
definitionCHROMAT_FILE: MSMg01no364_n10.b1 PHD_FILE: MSMg01no364_n10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:06 2005CHROMAT_FILE: MSMg01no364_n10.g1 PHD_FILE: MSMg01no364_n10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAATCCGCGGAA
TTCTCTGACATGCCGTCATGAGATATTCCTTGCATGCATGAGTTTGAGGT
TTCTGTGTTTAAAACTGATTTATTGACTGAGACCATCTGCATGAGAGAAG
GTTCCAGAATGTTGAGGTTGGAATTAGAGAACGGACAGACATGGGGGACT
CACCAGTTTATTGTGGGAGTAACCAAGATGACGAAGGGGTTGCCATGGTG
ATAGAGACCTTTGACTGTGCTGTTATTTGTGTCAGGATGTCCTTGTTGCC
TACTTGAGGGAGACACTGTGGTGATTTCTAAAGGCCGCCCGCTAGGCTGA
CACCTAAGGTCATGCTGTAATCCCAGCCCAGCCACCTCGCCCTTGCCAAA
TCCTCCAGACTCAACCCCCCGAACTTGCTTGAGTTTTGAAAGAAAAATAA
CTTGAATTCCCCATCTTTGGCGATCATCCCTGTGGCCGTATGTGAAACTC
TCATGACATGTGCTCTGTCTCATATGTCCTCATGCTCCCGGACATTTTTT
TTTTTTTTATTGTGTCGGCCTCCTGTTCCCCTTTCACTCCCCCTCACTTT
CTATTCCCATCTATTTCCTCCAATTTTTCCGTCCTCTTTTCGCCTCTGCT
TTTTATGTTCTCTTATATTTGCTCCCTCTCCCTTTTTTCCCTTTTCTTCT
TCCTTCCATCCATTTTGCCCTTTTTTCTTCTCTCATCTTTTCTTTTTTCC
TCCTCGTACGTTTCTCTTATATTCCCTTCTTTTTATTCGCTTTTATCCTT
CTTACTCATTTCCGCGTACTTATGCTCATTACTCCN
NCCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTTTTTTTTTAAAGCTTTATTT
TATTTTTATTTTTTTTAAGCTTTTTCCTTTTTTTTTTTTAGATTCATTTA
TTAGTTATATGTAAGTACACTGGAGCTGTCTTCAGACACTCCAGAAGAGG
GCACCCGACCTCACTACGGATGGCCGTGAGCCACCACGCCGTTGCTGGGA
GCCGATCTCTGGTCCCTCGGACGCGCTTCCGGTGCTCCTACCCTTTGAGC
CAACTGCCCGCCCCCCCCGCTTTTTTTTTTTCCCCCGCCTGCCCCCCCCC
CCGATTGCGGGTTTTTCCCCCCCGCCTCCGCCCTCTCGCCCTCCTCGTGT
GGCCGCCCGCGGCCGTCCCCCCCCCCCCTTCCTCTCCCTCCCCCGCTTTT
CGCCCGCGCCCCCCCCTTGCGCCGCTCCCTACCCCGCGCCTCGTCCCGCC
CGCGCGTGCCACCTGCTCCCCCCGGCCGCCGCACCCTCCGCCTCGCGCGC
GCCGCCACCACCCCTGTCCGCCCCCCCCCTGCCGCCCACGCAGGCTCCTC
CTCCCCCCCTCTTCTCTTTCTCCGCTCGCCCGCCCGCCCTCGCCCCGCCC
CGCCCGGGCCGCCCTGCGCCCCCCCATTCTCCTCCCCCCTCCCCCCCATC
TGCTTCCCCCCTCCCTCCGTCCCCTACCCTCCCCCCGCTCCAGCCCTGCG
CTTTGTGCCTCCCCCCCCCCCCCCCCCCGCTCGGGCCCTCCCACCGCCCC
CCCCCACCACCCCTCCTTTGGCGCCCCCGCCCCCCCGCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_n10.b1 MSMg01no364_n10.b1 CHROMAT_FILE:
MSMg01no364_n10.b1 PHD_FILE: MSMg01no364_n10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:06 2005
         (245 letters)



>mm_chr2_165941637_165942281
          Length = 645

 Score =  466 bits (241), Expect = e-136
 Identities = 244/245 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gatattccttgcatgcatgagtttgaggtttctgtgtttaaaactgatttattgactgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gatattccttgcatgcatgagtttgaggtttctgtgtttaaaactgatttattgactgag 386

                                                                       
Query: 61  accatctgcatgagagaaggttccagaatgttgaggttggaattagagaacggacagaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 accatctgcatgagagaaggttccagaatgttgaggttggaattagagaacggacagaca 326

                                                                       
Query: 121 tgggggactcaccagtttattgtgggagtaaccaagatgacgaaggggttgccatggtga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgggggactcaccagtttattgtgggagtaaccaagatgacgaaggggttgccatggtga 266

                                                                       
Query: 181 tagagacctttgactgtgctgttatttgtgtcaggatgtccttgttgcctacttgaggga 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gagagacctttgactgtgctgttatttgtgtcaggatgtccttgttgcctacttgaggga 206

                
Query: 241 gacac 245
           |||||
Sbjct: 205 gacac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)