BAC Information

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BAC

Clone NameMSMg01-364O03
Chromosome2 (Build37)
Map Location 120,351,533 - 120,351,999
singlet/doubletsinglet
Overlap geneZfp106
Upstream geneExdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1, Tyro3, 6330405D24Rik, LOC625403, Mga, Mapkbp1, Pla2g4b, Spnb5, Ehd4, Pla2g4e, LOC100043635, Pla2g4d, Pla2g4f, Vps39, Tmem87a, Ganc, Capn3
Downstream geneSnap23, Lrrc57, Cep27, Stard9, Cdan1, Ttbk2, Ubr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364O03.T7 (MSMg01no364_o03.b1)MSMg01-364O03.TJ (MSMg01no364_o03.g1)
ACCAG472972AG472973
length753769
length of high quality
(start - end)
249 (78 - 326)467 (77 - 543)
definitionCHROMAT_FILE: MSMg01no364_o03.b1 PHD_FILE: MSMg01no364_o03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:10 2005CHROMAT_FILE: MSMg01no364_o03.g1 PHD_FILE: MSMg01no364_o03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGGGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCAAAGGTTTTACCATTGCAGAACCAAAGGCAAAATCAC
ACCCCATGCATAAGGCAAATCATAGTCAGCTGCAGTGGACAGTCTGAAGC
GGCCCCATACTACAAACCTGGGATTAAATCAGAAATATATTCTCATAATA
TTTCTGCGCTTTTTAACATTTTTTAAAAGACATCAAAACCCCAAAAATTG
TCTTGTTAGGGTCATGCTATTAGACATCCCAATGCCAAAAAGGCAGCTGG
ATTCTATAACTGGAGCTCAAGGAAACCTTCATTGTCCTCATTTCTGTTGC
CCACAAGAGAGACAGATTATGCCAGTCTTTCAGCTTAAATTTTGTCTGGG
TCTTCATGTTCTGATTGCTAGATGAACTTTCCAGACCAACATACACAAAA
GGTACAATGACTAGAAGTAGCAATAATTGCTAGTGCTAAAGCAGCAATAG
TTATTATCTAAAGCCTGAAAGTGAACAACCTTCCTGTACTCCAGCAGCGA
CCTTAGTAGCCGAGGGGACCGGGCATTTCTCCTGTTTGTGGTGGGGTCCA
AGCTGGACTAAACCACTTATCCATTCCCAGGCTGGTCCTTGAGGAACTGA
ACTACATGTGCCCCTTTTATTCCTGACCACGTGTATTTCCATGATTTTCT
CCTCAAAGGTTCCCCTCTTGGATTGTTTATACCCCTTTTGTTTAGGTTGT
CGN
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTTAAGTTTCATTGTTCCCTGAC
TTTCTTGGAGCTTAATGAGTTGGCATCCATTTGACTCTTCTAAAGTGTTT
CTTCTGTCTTTGTGGTGTGTGGGTTAAGCTTGGTCAACCCATTTACTCAG
GAAGGCATGCACTCTGAATTTCTGAGCATTACTGCATCTATTACCTCATA
TGTAAACCAAGACTGATTAAAAACCCTGAGAAGCAAGTGTCATTGCTGGT
CACAGGGTTCTGGTGTTTACTGGTATTAACGGGAACTTATGTGGGTTGAG
AAGTAGCCAGGGATCGGGTTTTAACAGTTGAGGATAACTTCTCATAACTA
CAAATAATGTCATATTAAAAATTCAGTAAAAAAAGCAAACAGTCTAAATT
AAATTTGTCAGCAGAAAAAAGCTAGCCAAGTAATCCTGGCACCTCATGTT
GCTGGGTGCAGTGGCACAAATCTGCAATCCCCGGATTCCTTGGTGTGGGA
AGCCAAGGCAGGAGATTTGTCTGGAAGTTTGCAAGTCAGCTTATTCTGAT
CTATGAAGCTTATGGGATTAATCCTTATAGAAAGAGTTCTGCCTCTCGGC
AGGGACAAACCGGAATAAATTGTATCCCTAAAATTTGGCTATTTACCACT
TTATCGTTACCTCTGGGTAATCGTGATTCTCCATTTTACTATTCTTCTCT
ACTTCCCTGTTCGATGCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_o03.g1 MSMg01no364_o03.g1 CHROMAT_FILE:
MSMg01no364_o03.g1 PHD_FILE: MSMg01no364_o03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:10 2005
         (467 letters)



>mm_chr2_120351333_120352199
          Length = 867

 Score =  890 bits (460), Expect = 0.0
 Identities = 466/468 (99%), Gaps = 2/468 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttaagtttcattgttccctgactttcttggagcttaatgagttggcatccatttgact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 atttaagtttcattgttccctgactttcttggagcttaatgagttggcatccatttgact 608

                                                                       
Query: 61  cttctaaagtgtttcttctgtctttgtggtgtgtgggttaagcttggtcaacccatttac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 cttctaaagtgtttcttctgtctttgtggtgtgtgggttaagcttggtcaacccatttac 548

                                                                       
Query: 121 tcaggaaggcatgcactctgaatttctgagcattactgcatctattacctcatatgtaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tcaggaaggcatgcactctgaatttctgagcattactgcatctattacctcatatgtaaa 488

                                                                       
Query: 181 ccaagactgattaaaaaccctgagaagcaagtgtcattgctggtcacagggttctggtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ccaagactgattaaaaaccctgagaagcaagtgtcattgctggtcacagggttctggtgt 428

                                                                       
Query: 241 ttactggtattaacgggaacttatgtgggttgagaagtagccagggatcgggttttaaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ttactggtattaacgggaacttatgtgggttgagaagtagccagggatcgggttttaaca 368

                                                                       
Query: 301 gttgaggataacttctcataactacaaataatgtcatattaaaaattcagtaaaaaaagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gttgaggataacttctcataactacaaataatgtcatattaaaaattcagtaaaaaaagc 308

                                                                       
Query: 361 aaacagtctaaattaaatttgtcagcagaaaaaagctagccaagtaatcctggcacctca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 aaacagtctaaattaaatttgtcagcagaaaaaagctagccaagtaatcctggcacctca 248

                                                           
Query: 421 tgttgctgggtgcagtggcacaaatctgcaatccccgg-attccttgg 467
           ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 247 tgttgctgggtgcagtggcacaaatctgcaatccc-ggcattccttgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space:   391649
Effective search space used:   391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)