Query= MSMg01no365_b15.b1 MSMg01no365_b15.b1 CHROMAT_FILE:
MSMg01no365_b15.b1 PHD_FILE: MSMg01no365_b15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:31 2005
(403 letters)
>mm_chr2_164642697_164643499
Length = 803
Score = 737 bits (381), Expect = 0.0
Identities = 396/401 (98%)
Strand = Plus / Plus
Query: 1 ccaggactccaagctgactgtgtagtagagttaggaatagggaaaaaaagctttgtggtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccaggactccaagctgactgtgtagtagagttaggaatagggaaaaaaagctttgtggtt 260
Query: 61 ggcaatggcttcccgaaactgtcactaaatacacagcaatcgatgtaatcagatgactag 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcaatggcttccggaaactgtcactaaatacacagcaatcgatgtaatcagatgactag 320
Query: 121 aggggggctaagatgttgagctagcagaagggtaggacctggctttctagaaaagacgat 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 aggggggctaagatgttgagctagcagaagggtaggacctggctttctagaaaagatgat 380
Query: 181 ggctccgtgtatcctgaacggtgaatgtgctctgagatgaagagtgggagggtctttcaa 240
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggctccgtgcatcctgaacggtgaatgtgctctgagatgaagagtgggagggtctttcaa 440
Query: 241 acaaagggacaatcttaagccactgccagaagacactttatagtgggcaccagaagccat 300
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaaagggacaaacataagccactgccagaagacactttatagtgggcaccagaagccat 500
Query: 301 gggcagtgtgttgtcctaagacacaagaaggcggagaagggtgggaactaagattctttg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggcagtgtgttgtcctaagacacaagaaggcggagaagggtgggaactaagattctttg 560
Query: 361 gtccttacgtgctggcctggactgctccaagcccttcctga 401
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtccttacgtgctggcctggactgctccaagcccttcctga 601
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space: 312836
Effective search space used: 312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no365_b15.g1 MSMg01no365_b15.g1 CHROMAT_FILE:
MSMg01no365_b15.g1 PHD_FILE: MSMg01no365_b15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:31 2005
(519 letters)
>mm_chr2_164823068_164823987
Length = 920
Score = 982 bits (508), Expect = 0.0
Identities = 517/520 (99%), Gaps = 1/520 (0%)
Strand = Plus / Minus
Query: 1 agtctttggcgaggagccacgggacagggggagcaggcggcaagccaagagaggagagac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 agtctttggcgaggagccacgggacagggggagcaggcggcaagccaagagaggagagac 661
Query: 61 gcctgctcctccacgaaggcaccgggcaggacttcctcggtgggcacgggcctcagtttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 gcctgctcctccacgaaggcaccgggcaggacttcctcggtgggcacgggcctcagtttc 601
Query: 121 tccccctggaggggcgacccctcccctcctggccgcctggaagctcgcatccaccgaagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 tccccctggaggggcgacccctcccctcctggccgcctggaagctcgcatccaccgaagc 541
Query: 181 cggccaccgtctcacctttgtccgccaagaactggagggaggagagggaagcccaggctg 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 540 cggccaccgtctcacctttgtccgccaagaactggagggaggagagggtagcccaggctg 481
Query: 241 tggacaggaaagggaaaggagagcgccggccttaaagcacttggctctcagctcgggagc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tggacaggaaagggaaaggagagcgccggccttaaagcacttggctctcagctcgggagc 421
Query: 301 gcagggaaacctggctccccggcttccgccttcctgggtgcccgcagc-gggagagcgcg 359
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 420 gcagggaaacctggctccccggcttccgccttcctgggtgcccgcagcggggagagcgcg 361
Query: 360 gccgtggcgaggagtccgttgcgtttctagttacagaaatatggggacattaaaaataca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gccgtggcgaggagtccgttgcgtttctagttacagaaatatggggacattaaaaataca 301
Query: 420 cgcgatgtctcctgtacactatgtatagcgcgaccgagcggcacccgggctcggcgacca 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 cgcgatgtctcctgtacactatgtatagcgcgaccgagcggcacccgggctcggcgacca 241
Query: 480 gggtcctggggggagctcggtggggcgtggggagggacgg 519
|||||| |||||||||||||||||||||||||||||||||
Sbjct: 240 gggtcccggggggagctcggtggggcgtggggagggacgg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 920
Length adjustment: 10
Effective length of query: 509
Effective length of database: 910
Effective search space: 463190
Effective search space used: 463190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
