Query= MSMg01no365_c18.b1 MSMg01no365_c18.b1 CHROMAT_FILE:
MSMg01no365_c18.b1 PHD_FILE: MSMg01no365_c18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:36 2005
(577 letters)
>mm_chr2_92843262_92844235
Length = 974
Score = 1013 bits (524), Expect = 0.0
Identities = 560/573 (97%), Gaps = 3/573 (0%)
Strand = Plus / Plus
Query: 5 gaattcatttttaccgccgtcttctcttcccaataccccataatgagaaagactcggcac 64
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatttttaccgccgtcttctccccccaataccccataatgagaaagactcggcac 264
Query: 65 tgctgttgggaaagtgcatgatcagagctgggaggaagtgaggaatgagatcagtggaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgctgttgggaaagtgcatgatcagagctgggaggaagtgaggaatgagatcagtggaaa 324
Query: 125 tggtgcagcatcctgtgcacattctattggcctgcacgctctagtaagcatcgctatcag 184
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 325 tggtgcagcatcctgtgcacattctattggcccacacgctctagtaagcatcgctatcag 384
Query: 185 gaaggagaaagaggaggctcagaagccctgaatgtctccaggggagaccttcgtaagggc 244
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaaggagaaagaggaggcgcagaagccctgaatgtctccaggggagaccttcgtaagggc 444
Query: 245 attactctcctacaagagacattgatgacagcaatgaacacaagagacatgcctggggta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 attactctcctacaagagacattgatgacagcaatgaacacaagagacatgcctggggta 504
Query: 305 ataacccagagtggcataggccaggccagccaaccactgatggcacatccagcatgcccc 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 505 ataacccagagtggcataggccaggccagccaaccactgatggcacatccagcatgtccc 564
Query: 365 caccccacttcacatatccctgtgaactaagaacggctcctgaacctttaaaaaaaaaag 424
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 565 caccccacttcacatatccctgtgaactaagaacggctcttgaacctttaaaaaaaa--g 622
Query: 425 agcatttttagaatgtttttttttaaatgtttttcttcacgtaactttacttctatggtt 484
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 623 agcgtttttagaatgtttttttt-aaatgtttttcttcacgtaactttacttctatggtt 681
Query: 485 tttctacacttatatganattcaaatttcgtttgaaatcacatacaatccagatttctaa 544
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 tttctacacttatatgaaattcaaatttcgtttgaaatcacatacaatccagatttctag 741
Query: 545 accctatataaaattttactggaacacactttg 577
|||||||||||||||||||||||||||||||||
Sbjct: 742 accctatataaaattttactggaacacactttg 774
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 974
Length adjustment: 10
Effective length of query: 567
Effective length of database: 964
Effective search space: 546588
Effective search space used: 546588
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no365_c18.g1 MSMg01no365_c18.g1 CHROMAT_FILE:
MSMg01no365_c18.g1 PHD_FILE: MSMg01no365_c18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:36 2005
(521 letters)
>mm_chr2_92884835_92885758
Length = 924
Score = 978 bits (506), Expect = 0.0
Identities = 519/524 (99%), Gaps = 3/524 (0%)
Strand = Plus / Minus
Query: 1 cccctgagtgtcgtctccaccccccacctcctcattcccggtccccaaggtactatgtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 cccctgagtgtcgtctccaccccccacctcctcattcccggtccccaaggtactatgtga 665
Query: 61 tgcagaaactgcagaaacttggtggccaatgaccttcctctgtcaaggccagcgtgccct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 tgcagaaactgcagaaacttggtggccaatgaccttcctctgtcaaggccagcgtgccct 605
Query: 121 aggcaagtcgctgcagggactactgagcagccttgggctaataaggcaaaaagttgctag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 aggcaagtcgctgcagggactactgagcagccttgggctaataaggcaaaaagttgctag 545
Query: 181 tgtcttgagcccatctgagttggagctcagacccttagaatcagttgatgacctagagga 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 544 tgtcttgagcccatctgagttggagctcagacccttagaatcagttgatgacctagagaa 485
Query: 241 ggaaagtctgtc--ttg-tttttttgaccatggcttcgtgtggaggacagccgtggtctg 297
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ggaaagtctgtcttttgttttttttgaccatggcttcgtgtggaggacagccgtggtctg 425
Query: 298 tgattaagagtgatcagaaagaagcacgcccagtcctttgtgcgtggggactgcgagcag 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tgattaagagtgatcagaaagaagcacgcccagtcctttgtgcgtggggactgcgagcag 365
Query: 358 tgaagggagccttcttttcatcttgagaaccctataaactttgggagttttgtctatctg 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tgaagggagccttcttttcatcttgagaaccctataaactttgggagttttgtctatctg 305
Query: 418 aagcagaatagttttccatgaagtgtgattcccgtggcgcccctgtcccccgaagaggaa 477
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 304 aagcagaatagttttccatgaagtgtgattcccgtggcacccctgtcccccgaagaggaa 245
Query: 478 ggcagggactttcctaggtcttggttgatggtgtagggtgtatg 521
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 ggcagggactttcctaggtcttggttgatggtgtagggtgtatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 924
Length adjustment: 10
Effective length of query: 511
Effective length of database: 914
Effective search space: 467054
Effective search space used: 467054
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
