Query= MSMg01no365_c19.b1 MSMg01no365_c19.b1 CHROMAT_FILE:
MSMg01no365_c19.b1 PHD_FILE: MSMg01no365_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:36 2005
(542 letters)
>mm_chr2_140714912_140715854
Length = 943
Score = 1004 bits (519), Expect = 0.0
Identities = 534/541 (98%), Gaps = 5/541 (0%)
Strand = Plus / Plus
Query: 5 gaattctctat---tttcacaatttcttaaactgtatgttgtcaaaaagaaccgagctgt 61
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctatacat--cacaatttcttaaactgtatgttgtcaaaaagaaccgagctgt 262
Query: 62 taagctgacagtgtatttgactttatatgtatttcagaaggcccaggatacagatcaatc 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 taagctgacagtgtatttgactttatatgtatttcagaaggcccaggatacagatcaatc 322
Query: 122 gcatctaatcaattctggtatcatcattattttctattgcaaaaagagcttatatggaag 181
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 323 gcatctaatcaattctggtatcatcattattttctattgcaaaaggagcttatatggaag 382
Query: 182 gataacttgcctgtgcaaattttgtagtgagttgccattgagacatcacccgaggttaaa 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gataacttgcctgtgcaaattttgtagtgagttgccattgagacatcacccgaggttaaa 442
Query: 242 atattttggaaaagaacatgtgataataaaactgtacatttacaaagattgtaaaatatt 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 atattttggaaaagaacatgtgataataaaactgtacatttacaaagattgtaaaatatt 502
Query: 302 aaaaaggtagttggatattatgttgtttaaattttaataatcttctattttgaatgaagt 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aaaaaggtagttggatattatgttgtttaaattttaataatcttctattttgaatgaagt 562
Query: 362 ttctcctgagctgttgcctaatttctgttataaagttgacaatggcttttcacaacattc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttctcctgagctgttgcctaatttctgttataaagttgacaatggcttttcacaacattc 622
Query: 422 ttttcatgactggatatgcatgtgtagatctgcagttgaaggaatggtaaaagttcacat 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ttttcatgactggatatgcatgtgtagatctgcagttgaaggaatggtaaaagttcacat 682
Query: 482 tccccttttatgcaatgaaccactgaattcattttcaggataacattgaatggatatttt 541
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 683 tccccttttatgcaatgaaccactgaattcattttcaggataagattgaatggatatttt 742
Query: 542 a 542
|
Sbjct: 743 a 743
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 943
Length adjustment: 10
Effective length of query: 532
Effective length of database: 933
Effective search space: 496356
Effective search space used: 496356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no365_c19.g1 MSMg01no365_c19.g1 CHROMAT_FILE:
MSMg01no365_c19.g1 PHD_FILE: MSMg01no365_c19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:36 2005
(567 letters)
>mm_chr2_140833232_140834198
Length = 967
Score = 1050 bits (543), Expect = 0.0
Identities = 561/569 (98%), Gaps = 4/569 (0%)
Strand = Plus / Minus
Query: 1 cagacacccatcttctctaagcagttagatcccttccttcaggtattgctcccactcagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 cagacacccatcttctctaagcagttagatcccttccttcaggtattgctcccactcagc 708
Query: 61 tttgcgagtgaagatcacaatcctggcccctgtcagaagcttcctggcaggattgttgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 tttgcgagtgaagatcacaatcctggcccctgtcagaagcttcctggcaggattgttgtt 648
Query: 121 gttttctcagtatgaaaacaacaaagaaacaatccagtagccttaattcctgagcagcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 gttttctcagtatgaaaacaacaaagaaacaatccagtagccttaattcctgagcagcct 588
Query: 181 gacaggcgttcaaacaagttgaaactcaggtcacataagcagaccccaaactggccatca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 gacaggcgttcaaacaagttgaaactcaggtcacataagcagaccccaaactggccatca 528
Query: 241 cagaaagagttataaggcgatgagaagctccggggaacctattaaatccagcatccctgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 cagaaagagttataaggcgatgagaagctccggggaacctattaaatccagcatccctgt 468
Query: 301 cagtgtgaaacaggagcagtcttgccttctcagttccactgtttaaagagcccactaaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 cagtgtgaaacaggagcagtcttgccttctcagttccactgtttaaagagcccactaaga 408
Query: 361 agacacttcatccctctgccatctgcgcagcactgtagtaattagtatcttccatgccac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 agacacttcatccctctgccatctgcgcagcactgtagtaattagtatcttccatgccac 348
Query: 421 agggcacctcacggagtgaaatattaagagaagactcgaccggtcgtgacacatcaatga 480
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 347 agggcacctcacggagtgaaatattaagagaagactcgaccggttgtgacacatcaatga 288
Query: 481 aacaggattagttccatgtagccttttgcttannaagaga--anataanaatatttcagt 538
|||||||||||||||||||||||||||||||| |||||| | |||| |||||||||||
Sbjct: 287 aacaggattagttccatgtagccttttgctta--aagagagaaaataaaaatatttcagt 230
Query: 539 gttcttaattttacaagtaaagcgaagtc 567
|||||||| ||||||||||||||||||||
Sbjct: 229 gttcttaagtttacaagtaaagcgaagtc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space: 533049
Effective search space used: 533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
