BAC Information

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BAC

Clone NameMSMg01-365D02
Chromosome2 (Build37)
Map Location 94,406,969 - 94,407,356
singlet/doubletsinglet
Overlap genenone
Upstream geneAlx4, Ext2, 2610203E10Rik, Gm1967, Gm1335, LOC620695, Alkbh3, Hsd17b12, E530001K10Rik, Ttc17, Itpa-ps1, Api5
Downstream geneLOC100043259
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365D02.T7 (MSMg01no365_d02.b1)MSMg01-365D02.TJ (MSMg01no365_d02.g1)
ACCAG473208AG473209
length729736
length of high quality
(start - end)
454 (44 - 497)434 (57 - 490)
definitionCHROMAT_FILE: MSMg01no365_d02.b1 PHD_FILE: MSMg01no365_d02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:37 2005CHROMAT_FILE: MSMg01no365_d02.g1 PHD_FILE: MSMg01no365_d02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTACCGGGAACTTCTCTTTCCAGCTGTCTTCACTCCTGACCTCACAAG
AAGATGTTCAAAATGCTTTGGGCATTCACTTTGAGTTATGGTAAAGCAAG
AAAGAGGTGTGTAAAAACTCCATCAAATATAGACATCAGAGACATAATGA
TAAATGTGGACAATGGAACATCATGAGAAGGAGTGTAGCATGCTACTTAT
AGAATATTAACTTTGGAAACAAGGAGGCTGGGCATGAATCATTGCTTGGC
ATGAACTGACTGTGACTCCGGCCATGAATTTGATACCCTACTCCTCTGTT
TTCATAGACCTAGGATGAAGATGTTAATAGTTCCTCTCCTCTCCAAAGAC
TGAAAGTCTCCATAAACACTGTGCATCTAGCATCTGGTACAATACCTAGA
ATATATTGCCAAGCAATGGGCTTAGCCATTGTTGGAGCTTCCACTTGGGC
ACCCACTCATATTGAGCAATATTATCTTCTCTGAAATAATAAAGTACTTT
ATCTTAGGAAACAAGATATGAGAAAATTTCCATTAAATATTAATGAAGCG
TAGACTATATGAGCACTATAACTTACCTATCCCATGTGTCTTTGAAATGA
TTAATAAGATTGGAAATCCCTCTAATCAATCTATCTTCAGGTTCAGAGTA
AACACCCCTTTCCCTATACTCTAAAATAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCCGATCTTTCCAAGACTTTTATCACGAATGGGTGTTGGATCCTG
TCGAATGCTTTTTCTGTTGGGAGCCGCCCCCACATTCGCCGTCACAAGAT
GGCGCTGACATCCTGTGTTCTAAGTGGTAAACAAATAATCTGCGCATGTG
CCAAGGGTATTTTACGACTACTTGTACTCTGCTTTTCCCGTGAACGTCAG
CTCGGCCATGGGCTGCAGCCAATCAGGGAGTGATGCGTCCTAGGCGAAAT
ATAACTCTCCTAAATAGGGAAGGGGTTTCGGTTTCATTATTGAGGGGCTT
TCGTTTTTGGGGCTGGGCGCTGGGCGCTTGCCCTCCTGGCTCCAAAAGAT
GTAAGCAATAAAGTTTTGCCGCAGAAGATTTTGGTTTGTTGTGTTCTTCC
TCGTCGGGCGCGCGAACGCTATTAAGAATTGGTGCTGAAATCCGGGATGA
GAAATTCCGGGACGAGAAAAAATCCGTGAAGAAAAATCCCGGGAGGAAAC
TCGGGACGGGAGTTTCACCGGCGTAGGGAAGATCCCTCATTCCAGACCCA
CAATTGTGGGCCGCGGTAATAAAGTTCCCCTGTTAAGTCCATTGTTAACA
TGCACCTACTTGTTTTAACTCTTAACTTTTCTTCCGACCAAAGGGGTGTA
ACCTTTAATTTTATTTTAATACGCCTCTCTGTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_d02.b1 MSMg01no365_d02.b1 CHROMAT_FILE:
MSMg01no365_d02.b1 PHD_FILE: MSMg01no365_d02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:37 2005
         (454 letters)



>mm_chr2_94406969_94407822
          Length = 854

 Score =  743 bits (384), Expect = 0.0
 Identities = 387/388 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctaccgggaacttctctttccagctgtcttcactcctgacctcacaagaagatgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gaattctaccgggaacttctctttccagctgtcttcactcctgacctcacaagaagatgt 329

                                                                       
Query: 65  tcaaaatgctttgggcattcactttgagttatggtaaagcaagaaagaggtgtgtaaaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tcaaaatgctttgggcattcactttgagttatggtaaagcaagaaagaggtgtgtaaaaa 269

                                                                       
Query: 125 ctccatcaaatatagacatcagagacataatgataaatgtggacaatggaacatcatgag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 ctccatcaaatatagacatcagagacataatgataaatgtggacaatggaacatcatgag 209

                                                                       
Query: 185 aaggagtgtagcatgctacttatagaatattaactttggaaacaaggaggctgggcatga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 aaggagtgtagcatgctacttatagaatattaactttggaaacaaggaggctgggcatga 149

                                                                       
Query: 245 atcattgcttggcatgaactgactgtgactccggccatgaatttgataccctactcctct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 atcattgcttggcatgaactgactgtgactccggccatgaatttgataccctactcctct 89

                                                                       
Query: 305 gttttcatagacctaggatgaagatgttaatagttcctctcctctccaaagactgaaagt 364
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 88  gttttcatagacctaggatgaagatgttaatagtacctctcctctccaaagactgaaagt 29

                                       
Query: 365 ctccataaacactgtgcatctagcatct 392
           ||||||||||||||||||||||||||||
Sbjct: 28  ctccataaacactgtgcatctagcatct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)