Query= MSMg01no365_g12.b1 MSMg01no365_g12.b1 CHROMAT_FILE:
MSMg01no365_g12.b1 PHD_FILE: MSMg01no365_g12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:54 2005
(580 letters)
>mm_chr2_55433160_55434139
Length = 980
Score = 1060 bits (548), Expect = 0.0
Identities = 569/576 (98%)
Strand = Plus / Plus
Query: 5 gaattcataactaccccaaattattttcaatatgtagaaacataaatcaggattgaaatc 64
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcataacaacaccaaattattttcaatatgtagaaacataaatcaggattgaaatc 264
Query: 65 ttatagatgtttactctaataataactaagttccctgcagttttgctaatgagtcttgca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttatagatgtttactctaataataactaagttccctgcagttttgctaatgagtcttgca 324
Query: 125 tactggtgttaaaataggtgattgacaagtagacagaaatactgcaagagttcatctccc 184
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tactggtgttaaaataggttattgacaagtagacagaaatactgcaagagttcatctccc 384
Query: 185 cacaaaatatccatggaaggagttacagagacaaagtgtggaacagagactgaaggaatg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cacaaaatatccatggaaggagttacagagacaaagtgtggaacagagactgaaggaatg 444
Query: 245 accatacagaaaaagccccacctggggatttttccatcaccaaacccagacacttgttga 304
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 445 accatacagaaaaagccccacctggggatccatccatcaccaaacccagacacttgttga 504
Query: 305 tgccaacatgtgcttactgacagaagcaaggtatagctgtctctggaaaggctccaagag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgccaacatgtgcttactgacagaagcaaggtatagctgtctctggaaaggctccaagag 564
Query: 365 tgcctgacaaatacagaggtagatcctcttagcctaccattggacagggtccacaatgaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tgcctgacaaatacagaggtagatcctcttagcctaccattggacagggtccacaatgaa 624
Query: 425 ggaactagagaaaggacccaaggagctaaggggatttgcagccccataagaggaacagta 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 625 ggaactagagaaaggacccaaggagctaaggggatttgcagccccataagaggaacaata 684
Query: 485 tgaactaaccagtacccctagagctcccagggattaaatcaccaaccaaagagtacatat 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgaactaaccagtacccctagagctcccagggattaaatcaccaaccaaagagtacatat 744
Query: 545 ggtgggactcctggctctagccacatatgtaacaga 580
||||||||||||||||||||||||||||||||||||
Sbjct: 745 ggtgggactcctggctctagccacatatgtaacaga 780
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space: 552900
Effective search space used: 552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no365_g12.g1 MSMg01no365_g12.g1 CHROMAT_FILE:
MSMg01no365_g12.g1 PHD_FILE: MSMg01no365_g12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:54 2005
(553 letters)
>mm_chr2_55610134_55611087
Length = 954
Score = 988 bits (511), Expect = 0.0
Identities = 517/519 (99%), Gaps = 1/519 (0%)
Strand = Plus / Minus
Query: 36 cataacttaattaacctgtttatactaatatgatttctgccatgtgacttgttagttacc 95
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 954 cataacttaattaacctgtttatactaatatgatttctgccatgtgacttgttagttacc 895
Query: 96 tccctttcagccctagcctgctgctgctaattcttctggctgacaaaaacccagaactac 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894 tccctttcagccctagcctgctgctgctaattcttctggctgacaaaaacccagaactac 835
Query: 156 taccactgccacaaagtcctgcctatcttttcttgcctagccaatggatgtttagctttt 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 taccactgccacaaagtcctgcctatcttttcttgcctagccaatggatgtttagctttt 775
Query: 216 aaattaaccagtcagagaatgcctttggcaggtgaggaaggacaaagaagcataattcca 275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 aaattaaccagtcagagaatgcctttggcaggtgaggaaggacaaagaagcataattcca 715
Query: 276 aaatattctcccaacacagtcctgtctgatttttttcacagtcttgtacatggcccaaca 335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 aaatattctcccaacacagtcctgtctgatttttttcacagtcttgtacatggcccaaca 655
Query: 336 cttctggagaggagaaaggaatatgtcttgagggaataaggattgctaacagcaagaata 395
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 654 cttctggagaggagaaaggaatatgtcttcagggaataaggattgctaacagcaagaata 595
Query: 396 ttga-ttttttttttttgtcaagaagatagtaactattagcactacataggtgcattgct 454
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ttgatttttttttttttgtcaagaagatagtaactattagcactacataggtgcattgct 535
Query: 455 aaagaacgctgtactggtacagagaagtcctgtaggactaaagattccagtctatgaact 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 aaagaacgctgtactggtacagagaagtcctgtaggactaaagattccagtctatgaact 475
Query: 515 tggaacacagactgccttatcaattatcaattatgttca 553
|||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tggaacacagactgccttatcaattatcaattatgttca 436
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 954
Length adjustment: 10
Effective length of query: 543
Effective length of database: 944
Effective search space: 512592
Effective search space used: 512592
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
