Query= MSMg01no365_g13.b1 MSMg01no365_g13.b1 CHROMAT_FILE:
MSMg01no365_g13.b1 PHD_FILE: MSMg01no365_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:54 2005
(494 letters)
>mm_chr2_52952591_52953484
Length = 894
Score = 777 bits (402), Expect = 0.0
Identities = 471/502 (93%), Gaps = 13/502 (2%)
Strand = Plus / Minus
Query: 4 ggaattcttcatatgccgtggctaattctgacttgggcaagaaattgtaccatttatttt 63
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 ggaattcttcatacggtgtggctaattctgacttgggcaagaaattgtaccatttatttt 757
Query: 64 ctccttcagattttgggagctccttcagagtccggggttctgtctctagctctccataac 123
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 756 ctccttcagattttgggagctccttcagagtccggggctctgtctctagctctccataac 697
Query: 124 ctgtgtgtgccagcatttacctgtcactctactattaatactcaggaggtagcagctaga 183
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 696 ctgtgtgtgccagcattcacctgtcactctactattaatactcaggaggtagcggctaga 637
Query: 184 ggatcaggagttcggagttatccttgcccctatgttgtgttcaaggttagcctgggatat 243
|||||||||||| || |||||||||||||| || ||||||||||||||||||||||| |
Sbjct: 636 ggatcaggagtttggggttatccttgccccaatcttgtgttcaaggttagcctgggaaac 577
Query: 244 agtctcaaaaaccaaccaaagagacctccttctaataacacaaagcttgaaaaaattcaa 303
||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 576 agtctcaaaaaacaaccaaagagacctccacctaaaaacacaaagcttgaaaaaattcaa 517
Query: 304 ctcatatctcagactaggtatatggcaagtggatttctgtgagttctaggacacttaaac 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 ctcatatctcagactaggtatatggcaagtggatttctgtgagttctaggacacttaaac 457
Query: 364 aaccaagccctttggtggagctcagaagaccatgtatggctctcagacattggagcagga 423
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 456 agccaagccctttggtggagctcagaagatcatgtatggctctcagacattggagcagga 397
Query: 424 agctgtgatgttgaagttgacttggagaccataagatgttaaagcta------------- 470
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 agctgtgatgttgaagttgacttggagaccataagatgttaaagctaacagggagtggaa 337
Query: 471 ccagaccagaagaaagaacttg 492
||||||||||||||||||||||
Sbjct: 336 ccagaccagaagaaagaacttg 315
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space: 427856
Effective search space used: 427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no365_g13.g1 MSMg01no365_g13.g1 CHROMAT_FILE:
MSMg01no365_g13.g1 PHD_FILE: MSMg01no365_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:54 2005
(549 letters)
>mm_chr2_52770005_52770953
Length = 949
Score = 961 bits (497), Expect = 0.0
Identities = 541/571 (94%), Gaps = 28/571 (4%)
Strand = Plus / Plus
Query: 1 ttttttggaagccaaatttatttttataagcctttagcagaatactgtttgttcttggga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttttggaagccaaatttatttttataagcctttagcagaatactgtttgttcttggga 260
Query: 61 taattggctctggccttgtctttcaaatatgctttgaccaacgaccagttgagagaaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taattggctctggccttgtctttcaaatatgctttgaccaacgaccagttgagagaaaca 320
Query: 121 ggataaatgaaattgggaaattaagaaaatggctatttttttttcttcttaaaatgagaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggataaatgaaattgggaaattaagaaaatggctatttttttttcttcttaaaatgagaa 380
Query: 181 caaaagtcatgaggggggtcttttatttttcagataatttttaagaacccctgcctttat 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaaagtcatgaggggggtcttttatttttcagataatttttaagaacccctgccttta- 439
Query: 241 ttgttt------ggttttgcttaagtgttgtcactctggagagaggggaggattctgaag 294
| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 --g---cagaaaggttttgcttaagtgttgtcactctggagagaggggaggattctgaag 494
Query: 295 tctttaatgtggttctacaaatgtaagcctggctgtttaatcatggcatttctgcagaga 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tctttaatgtggttctacaaatgtaagcctggctgtttaatcatggcatttctgcagaga 554
Query: 355 cgaatctctgtgcccacacgtctcctccttctctcatttcttttaatgtcttagatgtgg 414
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 555 cgaatctctgtgcccacacgtctcccccttctctcatttcttttaatgtcttagatgtgg 614
Query: 415 actaagccttggaacagccactgctaagtgtttccacattggaaaaattgaagagtttgg 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 actaagccttggaacagccactgctaagtgtttccacattggaaaaattgaagagtttgg 674
Query: 475 ctggatacaattctgactttataggagggaattacatgtcccttaaggctgc-------- 526
||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 675 ctggatacaattctgactttataggagggaattacttgtcccttaaggctgcgttagaag 734
Query: 527 --at------tatttgctatttggacctagg 549
|| |||||||||||||||||||||
Sbjct: 735 tcatatactttatttgctatttggacctagg 765
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 549
Length of database: 949
Length adjustment: 10
Effective length of query: 539
Effective length of database: 939
Effective search space: 506121
Effective search space used: 506121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
