ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCATGCTTCAATAAATTATACTTGAAAAGAAGCTGTATTTAGTAAAAT
AAAAGCAGGACAGCTTTCAAAATTTGCAGGATGCAACTAAATAAAAGGAA
ACATTAACTTCCCTTAAATAATATTAAGAGAAAATAACTAAAATCAATGT
GCTAAAATCTCTTCTAAGAGTTGGTTAAATAAAACAATAAACCAAAATAA
AATAAAGTACATGAAATAATAATGATAATAGTAGGAATTTATTGGTGATA
TCAGTCATTATTTTTTCATCCCTTCTTTTATTATGTATTGTAAGCAAAAC
CAAACAGTTGACAAACTTTTTCCTTACTTGGAAAGACAGATGAGTTAGGG
CTAAATCCAAACTTATTTCCTTCTCTTAGAAGAAAGAAGAATCAGGTAAA
CTCTTTAAAATGTAAGTTTAGTACAGTTTTGAATGAAAAATATGTTGGCA
AGTTCAGTGTGGTGCTTTGATTGAGACTGTCTCTTATGGCTCAAGTATTT
GAAAACTTGGTGCCCAGTTTGTAGAAGTTTGGGTGGTGGAACATTGCTAG
AGGAAGTACATCATTGGTGATAGGATTTATGAGTTTACACCATAACTACA
CATACAGCTAGCTCTCTGCTTCTTGTTTCCCTTTTGTGAATGAAGGTGTG
GCACCCAGCTTCTTTTACCTGTGGCCATGACTCCAT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTGAGAGTGGGAGAAAGCCTTCTCCAGGGAAGAACTCACCAAATT
GTTAATCAAATTTGAAATGTTCATCTGTAAAACATACAAACAAATATAAT
TTCACAGGTAATATTTTACAGACCGTGAAGGGTGTATTGATGTGTGTGTG
TGTGTGTGTGTAATATAAAATAAAACTGAAAACAGAAGTCATGAATTTGA
AAGAGAATATGTGTGTGTGTGTGTGTGTGTCTGTGTGTGTGTGTGTGTGT
GTGTCTGTGTGTGTGTGTGTGTGTTGTGTTTTTTTTGGTTGGNTAATTTA
TTTTGTTTATTTTTCTTTTTTTTTTTTTTTTGGTTTGTTTTTTTTTTTTT
TTGCTTATCCCTTTGCGTTTTCTTATCCCCCTATCTTTAATTTTTTTCTC
TTATTCTTTCCCTTTTTTTTTTTTTTGTATCTATATTTTTCTCTCTCTAA
TCTTAATGTTCCTATTTATCTCCCCTTATCTTCATCTTTTTTGTCCCCCT
TTATACACCCCTCCTTTTCACTTTCTCTTATTTCTTCTCCTTCCTCCTTT
TTCCCTTTTTTTCTCTTTACCCTCACCCTTTTTTTCTTCTATCCTTCTCT
TCACTTTTTCCTATATTCTTCTTCTCTTTATCGTTATCACTTCACCTCCG
TCCTCCTATTTTTCCTTTTCTCCTCTCCATTTCCCTCTCTCCACCCGCAC
GCTTACTTATTATTCATTTTTTTATATCTATTCACCCACCTTTATTTTCT
TTN

Query= MSMg01no365_h02.b1 MSMg01no365_h02.b1 CHROMAT_FILE:
MSMg01no365_h02.b1 PHD_FILE: MSMg01no365_h02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:56 2005
         (625 letters)



>mm_chr2_55495241_55496265
          Length = 1025

 Score = 1139 bits (589), Expect = 0.0
 Identities = 613/621 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccatgcttcaataaattatacttgaaaagaagctgtatttagtaaaataaaagca 64
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 205 gaattccatgcttcaataaattatacttgaaaagaagcagtatttagtaaaataatagca 264

                                                                       
Query: 65  ggacagctttcaaaatttgcaggatgcaactaaataaaaggaaacattaacttcccttaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggacagctttcaaaatttgcaggatgcaactaaataaaaggaaacattaacttcccttaa 324

                                                                       
Query: 125 ataatattaagagaaaataactaaaatcaatgtgctaaaatctcttctaagagttggtta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ataatattaagagaaaataactaaaatcaatgtgctaaaatctcttctaagagttggtta 384

                                                                       
Query: 185 aataaaacaataaaccaaaataaaataaagtacatgaaataataatgataatagtaggaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aataaaacaataaaccaaaataaaataaagtacatgaaataataatgataatagtaggaa 444

                                                                       
Query: 245 tttattggtgatatcagtcattattttttcatcccttcttttattatgtattgtaagcaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tttattggtgatatcagtcattattttttcatcccttcttttattatgtattgtaagcaa 504

                                                                       
Query: 305 aaccaaacagttgacaaactttttccttacttggaaagacagatgagttagggctaaatc 364
           ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 505 aactaaacagttgacaaacttttcccttacttggaaagacagatgagttagggctaaatc 564

                                                                       
Query: 365 caaacttatttccttctcttagaagaaagaagaatcaggtaaactctttaaaatgtaagt 424
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 caagcttatttccttctcttagaagaaagaagaatcaggtaaactctttaaaatgtaagt 624

                                                                       
Query: 425 ttagtacagttttgaatgaaaaatatgttggcaagttcagtgtggtgctttgattgagac 484
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttagtatagttttgaatgaaaaatatgttggcaagttcagtgtggtgctttgattgagac 684

                                                                       
Query: 485 tgtctcttatggctcaagtatttgaaaacttggtgcccagtttgtagaagtttgggtggt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgtctcttatggctcaagtatttgaaaacttggtgcccagtttgtagaagtttgggtggt 744

                                                                       
Query: 545 ggaacattgctagaggaagtacatcattggtgataggatttatgagtttacaccataact 604
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 745 ggaacattgctagaggaagtacatcattggtgataggatttctgagtttacaccataact 804

                                
Query: 605 acacatacagctagctctctg 625
           ||||||||| |||||||||||
Sbjct: 805 acacatacaactagctctctg 825


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)