Query= MSMg01no366_e03.b1 MSMg01no366_e03.b1 CHROMAT_FILE:
MSMg01no366_e03.b1 PHD_FILE: MSMg01no366_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:03 2005
(396 letters)
>mm_chr2_132934129_132934922
Length = 794
Score = 545 bits (282), Expect = e-159
Identities = 362/410 (88%), Gaps = 39/410 (9%)
Strand = Plus / Plus
Query: 5 gaattctcactatcattctggtgggatgaaagtgataaattataaggtggttatatagca 64
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcactatcattttggtgagatgaaagtgataaattataaggtggttatatagca 264
Query: 65 gacataatactatggtatttagtgcctcaaaaactctgggcaggaaaagatgagagggaa 124
||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 265 gacataatactatggtatttagtgcctcaaaaactctggtcaggaaaagatgag--ggaa 322
Query: 125 tatatttgtaatctatctatctatctatctatctatctatctatctatctatctatctat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tatatttgtaatctatctatctatctatctatctatctatctatctatctatctatctat 382
Query: 185 ctatctatc----atct----atcatctatc----atctatttatca------------- 219
||||||||| |||| |||||||||| ||||||||||||
Sbjct: 383 ctatctatctataatctgtctatcatctatctatcatctatttatcagtctatctattca 442
Query: 220 tccactgatctttccatcatccatttatcatccatctatccatgtatgtacatatttatc 279
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tccactgatctatccatcatccatttatcatccatctatccatgtatgtacatatttatc 502
Query: 280 catttgtatatctatacatgtacatatgtatccatatata--tatatatatatacccatt 337
||||| ||||| |||| ||||||||||||||||||||||| ||| |||||
Sbjct: 503 catttatatatttatatatgtacatatgtatccatatatacctat----------ccatt 552
Query: 338 catttatgtatcatctatgtatgtatgtatgtatgtatgtatgtatgtat 387
|||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 553 catttatgtatcatctatatatgtatgtatatatgtatgtatgtatgtat 602
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 72
Number of extensions: 18
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13
Number of HSP's successfully gapped: 1
Length of query: 396
Length of database: 794
Length adjustment: 9
Effective length of query: 387
Effective length of database: 785
Effective search space: 303795
Effective search space used: 303795
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no366_e03.g1 MSMg01no366_e03.g1 CHROMAT_FILE:
MSMg01no366_e03.g1 PHD_FILE: MSMg01no366_e03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:03 2005
(517 letters)
>mm_chr2_133100065_133100983
Length = 919
Score = 984 bits (509), Expect = 0.0
Identities = 516/519 (99%), Gaps = 2/519 (0%)
Strand = Plus / Minus
Query: 1 aaaggaaaacatgccagagttgttcgttttcaaagcagtctcattgattacccgtcaccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 aaaggaaaacatgccagagttgttcgttttcaaagcagtctcattgattacccgtcaccc 660
Query: 61 tttcccaggtcctgcaagaccacacaccagctgccatccacttagccagacatgagttac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 tttcccaggtcctgcaagaccacacaccagctgccatccacttagccagacatgagttac 600
Query: 121 tgaagcaaagtcaccagactttggttttacaatgtgaaataggaaaaaaataaaagccac 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 tggagcaaagtcaccagactttggttttacaatgtgaaataggaaaaaaataaaagccac 540
Query: 181 caaaaagatttgaatagaaaaatctgatcttcaattcatttcctgctgttagcaaaataa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 caaaaagatttgaatagaaaaatctgatcttcaattcatttcctgctgttagcaaaataa 480
Query: 241 cacaaaaagaaaagagaagaaaaaaatggttcatttgtttaattctgggcaagagatact 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 cacaaaaagaaaagagaagaaaaaaatggttcatttgtttaattctgggcaagagatact 420
Query: 301 tcgttcctgga--ttttttttttttaatattccaaagctttggtctgaagcctgcaggct 358
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tcgttcctggattttttttttttttaatattccaaagctttggtctgaagcctgcaggct 360
Query: 359 gtactacacactgttcagcctatatttagaacaaagcaaacacatgcaattctttagcgc 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 gtactacacactgttcagcctatatttagaacaaagcaaacacatgcaattctttagcgc 300
Query: 419 taaatgctcctgccagtgggctctggaaaattgctaaccctaaaataaaacaatactgct 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 taaatgctcctgccagtgggctctggaaaattgctaaccctaaaataaaacaatactgct 240
Query: 479 ttctttaaatactcctgcttacacttacagtgaggagat 517
|||||||||||||||||||||||||||||||||||||||
Sbjct: 239 ttctttaaatactcctgcttacacttacagtgaggagat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 919
Length adjustment: 10
Effective length of query: 507
Effective length of database: 909
Effective search space: 460863
Effective search space used: 460863
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
