BAC Information

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BAC

Clone NameMSMg01-366G20
Chromosome2 (Build37)
Map Location 55,752,496 - 55,752,847
singlet/doubletsinglet
Overlap genenone
Upstream geneGalnt13, LOC666936, Kcnj3
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366G20.T7 (MSMg01no366_g20.b1)MSMg01-366G20.TJ (MSMg01no366_g20.g1)
ACCAG474142AG474143
length786775
length of high quality
(start - end)		464 (50 - 513)397 (78 - 474)
definitionCHROMAT_FILE: MSMg01no366_g20.b1 PHD_FILE: MSMg01no366_g20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:16 2005CHROMAT_FILE: MSMg01no366_g20.g1 PHD_FILE: MSMg01no366_g20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTGAACTTTACAAATATTAGCCACTCATATTTCATCTGTGAA
AACTTTATGCTTAGCTCCATATCCCATTCTAAAAACTGGATTGTTTTCTT
AATGTTTAGTTTCTTAATTCCTTGTATATTCTAAATAATTCTAGATACTA
GCCCTCTATTAGATGTACAACTGAAAAATAATTTCCCTATTCCATAGACT
GCCTTTTTACTCAAATGATGATATACTTTGCTGTACAAAAATTTTTTTTT
TGTTTTTGTTTTTTTTTTTTAATTTCATGAGTTACCAGTTCTTAATTGTT
TATCTTAATGCCATGGCTTCCAGGTCATTTGAAAAGGCATTGCTTTAAAG
ATCTGTGAAATATTAATTTTCACAGGGAAAATGATCAGCATGATTGAACA
TTTGAAGAATATGCTCAAACGTTCAATGATATACCAACTCATGTGACTGC
CATCAAATCTCAAAAAGTGGGAAGAATGTGCAAAAGCAGTGCAGATCAGT
ATTCATGGGAAGGAAAATAATGCTCTATAAAACTGCCTGGGAATTTCCCA
AGGGAATTTAAAAAGGAAAAATACCTTCTGGGTTTCATCTGGCTCCGGAA
AATAACCCCTTGCCATGGTCTTTTGTCCCCAATTTTTCTTGGAAAAAAGT
TGGTCCCCCACAAAACCTGGTTTTCTTAAATTTCCAGGGGGGGATTCCCC
CTTTTTATTGGTTAAATGGGCCACAAAAAAACCCCC

NNNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATTTTTCCATAAATTGTAAT
TGAACTTTTGGCTGGGTATGGTAGGATGTTCTGCTATCTATGGTCTGTAA
AGTCTATATGCTTCTGTCGAGACTCTTTCTGGCTTTCAAAGTCTGCATTG
AGAAGTCAGGTATTATTTTTAATTGTTTACATTATGTTAATATTTTTATA
TGTTTATCCTAGAATAGGCTATATGTTTATGTTTCCTCAGTTTTTCGCTT
GCAGCTTTTAATATTTATTCTTTCTTTATTTTATAAATTTAGTGTTTTGA
TTATGATATGTAGAGTTAAACATCTTTTGTAGTCCAGTTTATTTAATGCT
CTGGATGCTTCTTGTAATATAATACATATCATCTTCTTTAGGTTAGAAAA
CTTTTATTTTATGATCCTTTTGAAAATTTTTTTTGCACCTGTCAGTTGGA
TTTCTTCTTCTTTTATTCCTACCATCCTCTGATCTTTCATAGAAACTGGA
AGGTTTCCTGGAGCTTTATGGTGTCCTTTTCCTAAATTTAAATTTTCTCT
GGTCCAAAAACACTTTTTTTTCCTGTGGCTTAATAGCGAAAACCCCCTCT
CCCCCCCCCTGGAACTTTTTTTTTAACATTAACCTTCACTCTCCTTTTTG
AATTATAATGTTTCTTTTTTACCTTTTACTTTTTTTTTTTTTTTTTATTT
TATCCAATTTTTTTTCCCTTCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_g20.b1 MSMg01no366_g20.b1 CHROMAT_FILE:
MSMg01no366_g20.b1 PHD_FILE: MSMg01no366_g20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:16 2005
         (464 letters)



>mm_chr2_55751983_55752847
          Length = 865

 Score =  607 bits (314), Expect = e-178
 Identities = 343/356 (96%), Gaps = 10/356 (2%)
 Strand = Plus / Minus

                                                                       
Query: 114 cttaattccttgtatattctaaataattctagatactagccctctattagatgtacaact 173
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 cttaataccttgtatattctaaataattctagatactagccctctattagatgtacaact 806

                                                                       
Query: 174 gaaaaataatttccctattccatagactgcctttttactcaaatgat----gatatactt 229
           |||||||||||||||||||||||||||||||||||||||||||||||    |||||||||
Sbjct: 805 gaaaaataatttccctattccatagactgcctttttactcaaatgatgatagatatactt 746

                                                                       
Query: 230 tgctgtacaaaaattttttttttg-tttttgttttttttttttaatttcatgagttacca 288
           ||||||||||||   ||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 745 tgctgtacaaaa---ttttttttgttttttg-tttttttttttaatttcatgagttacca 690

                                                                       
Query: 289 gttcttaattgtttatcttaatgccatggcttccaggtcatttgaaaaggcattgcttta 348
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 gtttttaattgtttatcttaatgccatggcttccaggtcatttgaaaaggcattgcttta 630

                                                                       
Query: 349 aagatctgtgaaatattaattttcacagggaaa-atgatcagcatgattgaacatttgaa 407
           || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 629 aatatctgtgaaatattaattttcacagggaaagatgatcagcatgattgaacatttgaa 570

                                                                   
Query: 408 gaatatgctcaaacgttcaatgatataccaactcatgtgactgccatcaaatctca 463
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gaatatgctcaaacgttcaatgatataccaactcatgtgactgccatcaaatctca 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 865
Length adjustment: 10
Effective length of query: 454
Effective length of database: 855
Effective search space:   388170
Effective search space used:   388170
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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