BAC Information

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BAC

Clone NameMSMg01-366I13
Chromosome2 (Build37)
Map Location 108,474,361 - 108,474,601
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043078, LOC668790
Downstream geneLOC623003, LOC100043423, LOC623031, Mett5d1, Kif18a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366I13.T7 (MSMg01no366_i13.b1)MSMg01-366I13.TJ (MSMg01no366_i13.g1)
ACCAG474224AG474225
length801800
length of high quality
(start - end)
420 (51 - 470)245 (80 - 324)
definitionCHROMAT_FILE: MSMg01no366_i13.b1 PHD_FILE: MSMg01no366_i13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:24 2005CHROMAT_FILE: MSMg01no366_i13.g1 PHD_FILE: MSMg01no366_i13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGGGATCTATATTTGCGGCGCTAAACGACTCCTATAGTTCGAAGATCCGC
GGAATTCTTTGTTTTTTCCTAAGCCCCATTTTTTTAATGGGGTTATTTGA
TTTTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTC
CCCTATCTGATTTAGGATAGTTAATGATCCTTGCCCAATCTATTCATGGC
CTTTTTGTCTTATTGACCGTGTCTTTTACCTTGCAGAAGCTTTGCAATTT
TATGAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTG
TTCTATTCAGGATTTTTTCCCCTGTGTCTTTATCTTCGAGTCTTTTCCCT
ACTTTCTCCTCCATAAGTTTCACTGTCTCTGGTTTTATGTGGAGTTCCTT
AATCCACTTAGATTTGACCTTACCACAAGGATATAGGAATGGATCAATTC
GCATTCTTCTATATGATAACTGCCAGTTGTGCCAGCACCATTTGCTGTAA
ATGCTGCCTTTTATTCACTGGATGGTTTTAACTCCCCTTGCCAAAGATCA
ATTGACCTTTATGTTTGATGTTTTTGTTCTTGGCCCTTCTATTTTTTTCC
TTTTCCCTATTTGTTTGTTGTTTTCCCCTTATCCTTGTCGTTTTTTACAA
TTAATATGCTTTTTATTTCCTATTTTAGTACCCCCAGGTGTTTTTCCCTC
TACCTTTTCCCTTTCTCTCCTTAACTTATTCGTTATTTTTTTTCTTTCCC
CCTGTTTCTTCCCTTTTTCCCTTTTTTTTTTTCACCACATTTTTTTCACC
G
NNNCCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATGAATATCCTGTTTCTATG
ATATGAAGTTACTCATAAACGGACACAGTATATTGTCTGTGTGGGTCCAC
ATAAATCACTTATTTGGCAGGCAGTAACTGGAAGCTGTCCTAGCTAGATT
TTTGTCAGCTTTGCACAAGTTAGAGTTATCGCTCAAGAGGAGCCTCAATT
GAGAACACTTGTCCATCAGACTGCTCATGGAAAAGAGTTTAAGAGCATTT
ACCTAAAAATGATTACCATGGAGTTTTTTTTGGCATAGGACCCTGGTCCT
GGGTGGTATAAAAAGCAGGTTGAATAAGCCATGAGGAACAAGCTAGTAAA
ATAGCACTCCATCATGACTTCTGCTTCAGTGTCTGGCTTCAGGTTCCCAC
CCTGTTTTCTCGTAGTGATGATGCTGTTGCCTGTAAATTCAATCTGAAAT
CAACACTTTACTCCCTAAGATTTCTAAGTTAGGGGTTTATATTGCTTGTT
TGACTTGGGGGTTTTATCACCGTAATATTTTCCCTTTATTTATTTGGCCT
TTTTCTGTTCCTATAGGAAAAATATTTCTTGTTTCACTTTACATATTTTA
TTTTCCCTTAAATCTTTTTTTTTCTTTACAGTCCTTCGCCTAAATATTTC
TCCCTCTTTATCACCATTCTCCCCCCCCTCTCCTCTCTATTTTTTTATTT
TCAATGCTTTCATTCTTATCTTTTTTTTTTTTTTTTTCTCCCTCTTCTTT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_i13.g1 MSMg01no366_i13.g1 CHROMAT_FILE:
MSMg01no366_i13.g1 PHD_FILE: MSMg01no366_i13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:24 2005
         (245 letters)



>mm_chr2_108474161_108474805
          Length = 645

 Score =  443 bits (229), Expect = e-129
 Identities = 238/241 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgaatatcctgtttctatgatatgaagttactcataaacggacacagtatattgtctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 201 catgaatatcctgtttctatgatatgaagttactcataaacggacaccgtatattgtctg 260

                                                                       
Query: 61  tgtgggtccacataaatcacttatttggcaggcagtaactggaagctgtcctagctagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgggtccacataaatcacttatttggcaggcagtaactggaagctgtcctagctagat 320

                                                                       
Query: 121 ttttgtcagctttgcacaagttagagttatcgctcaagaggagcctcaattgagaacact 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttgtcagctttgcacgagttagagttatcgctcaagaggagcctcaattgagaacact 380

                                                                       
Query: 181 tgtccatcagactgctcatggaaaagagtttaagagcatttacctaaaaatgattaccat 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 tgtccatcagactgctcatggaaaagagtttaagagcatttacctaaaaatgattatcat 440

            
Query: 241 g 241
           |
Sbjct: 441 g 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)