BAC Information

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BAC

Clone NameMSMg01-366L02
Chromosome2 (Build37)
Map Location 111,104,493 - 111,104,992
singlet/doubletsinglet
Overlap genenone
Upstream geneBbox1, 1110018M03Rik, LOC668799, Slc5a12, Muc15, LOC668802, LOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276
Downstream geneOlfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825, Olfr1305, Olfr1306, LOC668827, Olfr1307, Olfr1308, Olfr1309, LOC433463, Olfr1310, Olfr1311, Olfr1312, Olfr1313, Olfr1314, Olfr1315-ps1, Olfr1316, Olfr1317, Olfr1318, GA_x5J8B7W3P0G-705890-705633, LOC100043187, Agpat7, Nut, Nola3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366L02.T7 (MSMg01no366_l02.b1)MSMg01-366L02.TJ (MSMg01no366_l02.g1)
ACCAG474346AG474347
length754739
length of high quality
(start - end)		471 (50 - 520)507 (81 - 587)
definitionCHROMAT_FILE: MSMg01no366_l02.b1 PHD_FILE: MSMg01no366_l02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:36 2005CHROMAT_FILE: MSMg01no366_l02.g1 PHD_FILE: MSMg01no366_l02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACGCCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTCTTTATCTCTGGGTTATTTGGTTTTTCTGGAGGCTAAC
CCTTTGAGTTTTTTGTGTATTGTGGATACTAGTTTGTTATCAGATGTAAG
GTTGGTATAGATATTTACCCAATATATAGGTTGCTATTTTGTCCTATTGA
CAGTGTCAGAAGATTTGCAGTTTCATGAGGTCCTATTTGTCAATTGTTAC
TGTTAGAGCCTGAGCCATTGGTGTTCTGTTCAGCAAATTTTACCCTGTGC
CAACACGTTCAAGGCTCTTTCCCACTTTAACTTCTATTAGATTCAGTGTA
TCTGGTTTTATGTGGAGGTCCTTGGTCAACTTGGACTGAACTTTGTACAA
TAAGATTAAAAGGGGTCAATTTGCACTCTTCTACATGCAGACCTCCAGTT
AGACCAGGTTCATTTGTTGAAAATGCTTTCTTTTTCCAGTGTATGGTTAT
TGGCTTCCTTGTTAAAGACCATGTGACCATAGGTGTGTGGATTTCTTTAT
TTTGGGGGTCTTCTGTTCTATTCCTTTGATGTACCTTACTGCCCCTTGTT
TAACACCTTGGTGTTTTTTTACCATTTCCTCCCTATTACTGGTTTTGATT
ACTTTTTCCGCCTTCCTCTTTATTCGCCCTTTTTTTGCTAATATTTGCTC
CCCCTCTTTCCTTCCCCCCTTTTTTCCTTTCCTTTTTCCACCTTGTTTTT
TTTT

NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTGACCCCA
TTTTTAATGGGGTTACTTTAATTTCTGGGCAGTACATATACTAAAATTGT
TTTTAATATCTTCCAGCTTTCATATTTCATATTTCATATTTCATATTTCC
TATGTCATCAGTTTATGGTTGATTATATGAAGGCATTAATTTTAATTTTC
TGGCTGTATTTATCTTTTTATCTTTTATGTTTTTATGTCTACATGGCTAT
TTTGAATGCATGTATATATTTATGTTAGTACGTGTGTGTGTGTGTCTGTG
TGTGTGTGTGTGTGTGTGTCTGTGTGTGTGCGTGTGCATGTGTGTGTGTG
TGCTTGTGTATATGTGTGTGTGTTCTTCCTCNNGAATACACCAATATGTG
TCATTGGTGGCTATAAGGTGATAGGTTGATGTCAAGAGGCTTTTTCAATT
GGTGTCCTTCTTATACATTGAGATGAAATGATTCACTCGAACCCTGAATC
TCACATGTCCCAAGAACCTCTTGTCTCTCCCTCTTAGATGGGATTATAGA
ATGGGTCACTCATCATTTTCATAAATCCTGGGGATAGAACTCAGGCCCTC
CACCTTATTAGGTTAGATTCTTTACCCAGTGATTCATCTCCCTACCTTTG
GCTTTAGAATCCCGAATTATGGATATTTTCCACTTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_l02.g1 MSMg01no366_l02.g1 CHROMAT_FILE:
MSMg01no366_l02.g1 PHD_FILE: MSMg01no366_l02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:37 2005
         (507 letters)



>mm_chr2_111104454_111105360
          Length = 907

 Score =  851 bits (440), Expect = 0.0
 Identities = 486/514 (94%), Gaps = 21/514 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgtttagctctg-accccatttttaatggggttactttaatttctgggcagtacatat 59
           |||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 539 tttgtttagctctgtaccccatttttaatggggttacttgaatttctgggcagcacatat 480

                                                                       
Query: 60  actaaaattgtttttaatatcttccagctttcatatttcatatttcatatttcatatttc 119
           ||||||||| ||||||||||||||||||              ||||||||||||||||||
Sbjct: 479 actaaaattatttttaatatcttccagc--------------tttcatatttcatatttc 434

                                                                       
Query: 120 ctatgtcatcagtttatggttgattatatgaaggcattaattttaattttctggctgtat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ctatgtcatcagtttatggttgattatatgaaggcattaattttaattttctggctgtat 374

                                                                       
Query: 180 ttatctttttatcttttatgtttttatgtctacatggctattttgaatgcatgtatatat 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 ttatctttttatcttttatgtttttatgtctacatggctattttgaatgcatgtatatat 314

                                                                       
Query: 240 ttatgttagtacgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtg------tgtgtctgt 293
           |||||||||||||||||||||||||| ||||||||||||||||||      |||||||||
Sbjct: 313 ttatgttagtacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtctgt 254

                                                                       
Query: 294 gtgtgtgcgtgtgcatgtgtgtgtgtgtgcttgtgtatatgtgtgtgtgttcttcctcnn 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 253 gtgtgtgcgtgtgcatgtgtgtgtgtgtgcttgtgtatatgtgtgtgtgttcttcctcaa 194

                                                                       
Query: 354 gaatacaccaatatgtgtcattggtggctataaggtgataggttgatgtcaagaggcttt 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 gaatacaccaatatgtgtcattggtggctataaggtgataggttgatgtcaagaggcttt 134

                                                                       
Query: 414 ttcaattggtgtccttcttatacattgagatgaaatgattcactcgaaccctgaatctca 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 ttcaattggtgtccttcttatacattgagatgaaatgattcactcgaaccctgaatctca 74

                                             
Query: 474 catgtcccaagaacctcttgtctctccctcttag 507
           ||||||||||||||||||||||||||||| ||||
Sbjct: 73  catgtcccaagaacctcttgtctctcccttttag 40


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space:   445809
Effective search space used:   445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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