BAC Information

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BAC

Clone NameMSMg01-366M10
Chromosome2 (Build37)
Map Location 144,079,534 - 144,079,777
singlet/doubletsinglet
Overlap geneSnx5
Upstream geneLOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481
Downstream gene8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik, Slc24a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366M10.T7 (MSMg01no366_m10.b1)MSMg01-366M10.TJ (MSMg01no366_m10.g1)
ACCAG474408AG474409
length771763
length of high quality
(start - end)
244 (76 - 319)246 (74 - 319)
definitionCHROMAT_FILE: MSMg01no366_m10.b1 PHD_FILE: MSMg01no366_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:43 2005CHROMAT_FILE: MSMg01no366_m10.g1 PHD_FILE: MSMg01no366_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGACATCCG
CGGAATTCTCATATTTCCCTAAAACTTTGGTACGTCTATACAAGAGATCC
TGGAAAGATTAACAATCATGATGTAAAAAAATCTCCAAAGAAATAATCAT
ATCTGAAAATGTCTAGGCATATGCATGTGTCTCTATTGCGTGCATGCAAA
AGTCTAGAAAGCATCCAGTGCGAACATTTTGAAATGGCAAGCCTCTAGCC
AATTTCTCTATCTTGCATAAAGATTTTATTTTCCTAACTATGTGGACATA
ACTGCATACATGAGTCTGGATTTTTTTGCCACCTGATGTGGGGTACAGGA
TATTAAACTGCTGGGCCATCGCTCTAGCCCTTTACCCAGCATAATCTTAT
GCTAATATAGCTTATTAACATTGTACTTGCCTAGCATGCTCTAGGTCTGA
TACAAAGCAACAGGGGCAGAAGGGGGGGATAATGAGGCTATTTAGTTTCT
GATGTTTGAAGATCATTTCCATAATCATTATATAAAACATCCCACATAAA
AATTTCCTTCTAGTTGAATCAGTATTTGAAGATATTTCCGAAAATCATAC
AGCATATTCAACATGTTTATTCCAATTACTGTTGAGTTAGGTAAAAAGCC
CCTGTATTCTGAACTATAATAACACCCTTGAAACATAATACTGCTCCATG
AAACCCCACTTTTCGTAAACAACTTTTCACTTTGAATTATTGTCCTAATC
ACACCCCATATCTTCTTTTTT
NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTCAGCGAAAATTCCAGAAGACCGCTTGGGAAATGTA
AAAAGCAAAAGCCAACAGGAAGGACTTTTTTTTTTTTAAGATTTATTTAT
TATTATATGTAAGTACACTGTAGCTATCTTCTGATGCACCAGAAGAGGGC
ATCAGATCTCATTACGGGTGGTTGTGAGTCACCATGTGGTTGCTGGGATT
TGATCTCTAGACCTTCAGAAGAGCTGTCAGTACTCTTACCTGTTGAGCAA
TCTCACCAGCCCAGGAGGTTCTTTTCTAAGGAAGACACATCTAAAACCCG
GAAGACAACATGGAAAGGACTCTACATGCTAGTACACGTATGTTGATTGA
GTTTTTTTTTTTGGCCCCCCCCTTTTTTTTTTTTTTCTTTTTTCCTTTCC
CATTTTTTTTCTCTTCCCCCCCTTCCTTTTTCATCTTTCCCCTTTCTCTT
TTTCTCCTCCCCCTTTTCCCCCTTTTTTTTTTTTTCCCCCATCTCCACTT
TCTTTCTTTCTTTCCATATCTTTCTTTTTTTTTTTTTTTCTATATTTCTT
TTTACTTTCTCCCTTTCCCTATTCTTTTTTTTTTTTTCCCCACTTTTTCC
TTCCCTACCTTTTTTTTTTTTTTTTCTCACTCTCCCCTTTTTTTCTTATC
TTTATTTTTTATCCCTTTCTATTTTCTCTTTCTATCCTTTTTTCCCAATT
TTTCTCCTCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_m10.b1 MSMg01no366_m10.b1 CHROMAT_FILE:
MSMg01no366_m10.b1 PHD_FILE: MSMg01no366_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:43 2005
         (244 letters)



>mm_chr2_144079334_144079977
          Length = 644

 Score =  441 bits (228), Expect = e-128
 Identities = 240/244 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttggtacgtctatacaagagatcctggaaagattaacaatcatgatgtaaaaaaatctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttggtacgtctatacaagagatcctggaaagattaacaatcatgatgtaaaaaaatctc 260

                                                                       
Query: 61  caaagaaataatcatatctgaaaatgtctaggcatatgcatgtgtctctattgcgtgcat 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct: 261 caaagaaataatcatatctgaaaatgtctaggcatatgcatgtgtctctattgcgtacac 320

                                                                       
Query: 121 gcaaaagtctagaaagcatccagtgcgaacattttgaaatggcaagcctctagccaattt 180
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 321 gcaaaagtctagaaagcatccagtgccaacattttgaaatggcaagcctctagccaattt 380

                                                                       
Query: 181 ctctatcttgcataaagattttattttcctaactatgtggacataactgcatacatgagt 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 ctctatcttgcataaagattttatttttctaactatgtggacataactgcatacatgagt 440

               
Query: 241 ctgg 244
           ||||
Sbjct: 441 ctgg 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)