BAC Information

Click to search

BAC

Clone NameMSMg01-366N06
Chromosome2 (Build37)
Map Location 93,264,416 - 93,404,184
singlet/doubletdoublet
Overlap geneCd82
Upstream geneCry2, Slc35c1, LOC100042775, LOC100043205, Chst1, Syt13, LOC100042784, Trp53i11, C230071H18Rik, Tspan18, LOC100042789, LOC639658
Downstream geneAlx4, Ext2, 2610203E10Rik, Gm1967, Gm1335, LOC620695, Alkbh3, Hsd17b12, E530001K10Rik, Ttc17, Itpa-ps1, Api5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-366N06.T7 (MSMg01no366_n06.b1)MSMg01-366N06.TJ (MSMg01no366_n06.g1)
ACCAG474448AG474449
length756743
length of high quality
(start - end)		472 (75 - 546)512 (83 - 594)
definitionCHROMAT_FILE: MSMg01no366_n06.b1 PHD_FILE: MSMg01no366_n06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:47 2005CHROMAT_FILE: MSMg01no366_n06.g1 PHD_FILE: MSMg01no366_n06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:03:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,403,713 - 93,404,184)(93,264,416 - 93,264,927)
sequence
NNNNTTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATGAATATGCCAGACAGCAGCAGCAACCCAGACCCTATT
AGCCCAAGAGCTTCGTGGCAGCCCCAGATGCCAGTGGTACCCATAAGCAT
CCGTGCAGACAGGATCGCCCCTCCAACTCCTTTGACATGCCTGTTGGCCC
TTGGCATGTGGAGGCATCGTCTGGGCCACTTTCCCATGTGCAAGGCCCCA
CAGAGGCCACCAGGGACTTCAGCATTGTCCTGCCCAGAAAGCTTCCACTT
GGGTCATTAATAACAGTGTATTTTATTATATGAAAGCGGGCTTCAAAGAG
CTGTGGGTTTATGGGAAACAACTTGGACGGGAGTCATTATTTTTGCCGCT
CCATCTCGCCCCTTATGCTGTCTCCTCTGTCTTCCACAGAACTCACGTTT
GATCTCCTGCCTGGGCTGCTTTCTTCTGTTGGCTCAGGGTCCATGGGGAG
CGAACTATTGTGACCACGGTGGTAAGGATGGGGAAACCCTTTGAAATGGN
CTCTGGTCTGAGAGCCGCTATGGTAAGGCGGTGCAGGGGAACCCTGAAAG
GTGGCTTCCGGAATGAGTAATCCTTGCCGTGCCCTTTACCATGCCCGAAG
AGGAAGACTTGGTTCGTTAAATGTTTGGCCCACGGCCAGGGTTATTAACA
ACGCTTTGGTCTATCCACCCCACATTTCTTTACTGGTTAATTCCCTTATT
CCTTTG

NNNNNNCCAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGCTTCCAGATCTTT
CCAATCCACAGCTCAGCAGTGGCTGACTTTCACAGAAAGCCCCTACCGAG
ATCTTTCAACTGACCCTTCCACCTGACCTGTGGCCCAGGGACTGGCCCTG
TTCCCCCACCACAGGCCTAGAGAGACTTGTGAACTTAGGCAAGCCACACA
ACCATGTGCAAGAACTGAAGTTTGGACTTGAGCTTGTCTGCTCAAAGAAC
CCAGACCGACATCCATCTGCAACGCTCCCGCTGCGTTCAACCACATGCCA
GAGACGCTCCTGTGGTTTGCGCACCCCACAACTGGGCTGTCTGCCTGCAG
GTGTTGAGTCTGGCTGTCCTGACCATCTGGGCCTAGCTTCTAGTCTCTAG
TAAGCAGGTAATCCCCAGGCCTAGACACATCTCCCCATTACTTCCACATC
CGCCCCTGTTAGTAGGTCCCCCTTTTGTAGCCACAGGGTTCTGTATTTTC
CCAGTGTGGTTGTCATGGCAGCCGGACTTCCCTACCTCCTCCACAACCCT
GCCACAGATGCCAACAGGTGATAGAGGCCCTGGGTGATTTCCACCAGGGG
GGGTGATTTCCATGGAAATCACTCAGCATCCCGGAATCCAGGATGTTGCT
TAAACAGCTAGAGTCATAGCCCCCCAATGTTACCTGGTATTGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no366_n06.b1 MSMg01no366_n06.b1 CHROMAT_FILE:
MSMg01no366_n06.b1 PHD_FILE: MSMg01no366_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:47 2005
         (472 letters)



>mm_chr2_93403513_93404384
          Length = 872

 Score =  882 bits (456), Expect = 0.0
 Identities = 468/472 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagcagcagcaacccagaccctattagcccaagagcttcgtggcagccccagatgccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 acagcagcagcaacccagaccctattagcccaagagcttcgtggcagccccagatgccag 613

                                                                       
Query: 61  tggtacccataagcatccgtgcagacaggatcgcccctccaactcctttgacatgcctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 tggtacccataagcatccgtgcagacaggatcgcccctccaactcctttgacatgcctgt 553

                                                                       
Query: 121 tggcccttggcatgtggaggcatcgtctgggccactttcccatgtgcaaggccccacaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tggcccttggcatgtggaggcatcgtctgggccactttcccatgtgcaaggccccacaga 493

                                                                       
Query: 181 ggccaccagggacttcagcattgtcctgcccagaaagcttccacttgggtcattaataac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ggccaccagggacttcagcattgtcctgcccagaaagcttccacttgggtcattaataac 433

                                                                       
Query: 241 agtgtattttattatatgaaagcgggcttcaaagagctgtgggtttatgggaaacaactt 300
           |||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 agtgcattttattaaaggaaagcgggcttcaaagagctgtgggtttatgggaaacaactt 373

                                                                       
Query: 301 ggacgggagtcattatttttgccgctccatctcgccccttatgctgtctcctctgtcttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ggacgggagtcattatttttgccgctccatctcgccccttatgctgtctcctctgtcttc 313

                                                                       
Query: 361 cacagaactcacgtttgatctcctgcctgggctgctttcttctgttggctcagggtccat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 cacagaactcacgtttgatctcctgcctgggctgctttcttctgttggctcagggtccat 253

                                                               
Query: 421 ggggagcgaactattgtgaccacggtggtaaggatggggaaaccctttgaaa 472
           |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 252 ggggagcgaactattgtgaccacggtgggaaggatggggaaaccctttgaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space:   398244
Effective search space used:   398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no366_n06.g1 MSMg01no366_n06.g1 CHROMAT_FILE:
MSMg01no366_n06.g1 PHD_FILE: MSMg01no366_n06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:03:47 2005
         (512 letters)



>mm_chr2_93264216_93265127
          Length = 912

 Score =  951 bits (492), Expect = 0.0
 Identities = 507/512 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacagcttccagatctttccaatccacagctcagcagtggctgactttcacagaaagccc 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 tacagcttccagatctttccaatctacagctcagcagtggctgactttcacagaaagccc 260

                                                                       
Query: 61  ctaccgagatctttcaactgacccttccacctgacctgtggcccagggactggccctgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaccgagatctttcaactgacccttccacctgacctgtggcccagggactggccctgtt 320

                                                                       
Query: 121 cccccaccacaggcctagagagacttgtgaacttaggcaagccacacaaccatgtgcaag 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccccaccacaggcctagagaaacttgtgaacttaggcaagccacacaaccatgtgcaag 380

                                                                       
Query: 181 aactgaagtttggacttgagcttgtctgctcaaagaacccagaccgacatccatctgcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactgaagtttggacttgagcttgtctgctcaaagaacccagaccgacatccatctgcaa 440

                                                                       
Query: 241 cgctcccgctgcgttcaaccacatgccagagacgctcctgtggtttgcgcaccccacaac 300
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 441 cgctccggctgcgttcaaccacatgccagagacgctcctgtggtttgcgcaccccacaaa 500

                                                                       
Query: 301 tgggctgtctgcctgcaggtgttgagtctggctgtcctgaccatctgggcctagcttcta 360
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgggctgtctgcctgcaggtcttgagtctggctgtcctgaccatctgggcctagcttcta 560

                                                                       
Query: 361 gtctctagtaagcaggtaatccccaggcctagacacatctccccattacttccacatccg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtctctagtaagcaggtaatccccaggcctagacacatctccccattacttccacatccg 620

                                                                       
Query: 421 cccctgttagtaggtcccccttttgtagccacagggttctgtattttcccagtgtggttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cccctgttagtaggtcccccttttgtagccacagggttctgtattttcccagtgtggttg 680

                                           
Query: 481 tcatggcagccggacttccctacctcctccac 512
           ||||||||||||||||||||||||||||||||
Sbjct: 681 tcatggcagccggacttccctacctcctccac 712


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 912
Length adjustment: 10
Effective length of query: 502
Effective length of database: 902
Effective search space:   452804
Effective search space used:   452804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |