BAC Information

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BAC

Clone NameMSMg01-367D12
Chromosome2 (Build37)
Map Location 8,928,151 - 8,928,530
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC672230
Downstream geneLOC100040710, LOC100040548, LOC100040566, Gata3, LOC100040768, 4930412O13Rik, Taf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367D12.T7 (MSMg01no367_d12.b1)MSMg01-367D12.TJ (MSMg01no367_d12.g1)
ACCAG474744AG474745
length734723
length of high quality
(start - end)
---380 (49 - 428)
definitionCHROMAT_FILE: MSMg01no367_d12.b1 PHD_FILE: MSMg01no367_d12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:18 2005CHROMAT_FILE: MSMg01no367_d12.g1 PHD_FILE: MSMg01no367_d12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATTTGCGGCGCATACACTCCTATTGCAGAGATCCGGGATTCTGAAGACC
ACGTGGGGTAGGAAAATACCATTTACTTTTTTAATTAAAGCTGGATGATA
AGACACAGATGAAAAACAGCTCTTNGCGCANGTCTGGGAAATCATTTNCG
TAGGAAAATAAACTTTTTTTCTCCAATAAAAGCANCCAAAGGGTTTTTTC
CGGGTTTTTGAGAAAGTGGGCAGAAAAACCAATACCCAATTTCCAAAAAA
AAAAAAACCGAGGGTTTTATTCCCGGGTTTCCCTAAAAAGAAAAAGGGGT
CTTGGGTGGGGGTTAACCCCNAACACCCACCCCCACCCCTTTTTAAAAAG
GGGGGGTTTTTACCCGGCGCCCCCCCCCCCCCCCCAGAGTTTTTTCCTTT
TGGGAAAAAAAAAACCCTTTTTGTTTTTGCCCCCCCCCACCCCCCCCCCC
CCCCCCAAATAAATAAAGACCCCCCCCCCGTTTTTTTTTTTAAAAAAAAA
AAANTTTTTTTCCCCCCAAAAAAAAAAAAATAATATGTCCCCCCCCCGGG
GGGGGGCGACAAACACATATCTTTTTTTTTTTTTTGTGGGGGGGGAATAA
AAAAAAAAAAATATTTTTCCCGCCCCCCCCTCCTCCTTTTCTTATTAATA
AAAAAAAACCTATAAACTCTTCTCCTCTTTCTCCTAAAAAAAAAAAAAAA
CAACCCGCGGCCTTTCCGTTTTTGGGGGTGGGGG
GCCTGTTCGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAA
TTTTCAAGTTTATTTTATTTAGAAGACCAAAATAGCCCTTATAGTGCTGT
AATTGAAAATGTTCCAATTTTCCATCTAAAGGGTTGATTCTACAGGTGTG
TCTACACACACGTGGAGTCAGGAGGGCAGTACTGCTGTCTTCCTCTGTGG
CTCTCTGCCTTATTCTTTTCAGATACTTCCTCTCATTCCATGAGTAGTGT
ACCACTTGGCTGGTCAACAATTCCCAATGATCCTTCTGTCTCTTAGCCCC
AGACCAGCTCTACAACTACAGACATACAACCTTTTGCCCTGTTTTCACAT
GGATGCTGAGAATCCAAAGTTGGGTCATGTTTGTGTGCAAGTGCTTTATT
ATCTGAGTCATCTCCTTAGGTCCCAACATGGGTGGTACTGTTCTAGCACC
AACAGTACACTTTAAAAAATGAAAAATGTGTAAAATAGCTTGTTCACATT
TTCATGAAGTAATACTGAAATGATAGTATTTTTATAATGTGACTCATACT
AAATGGCGGCTAGATTGATTTAGACAGGCTAGATTCACCTGTCTTATTCA
CCTTTTATTTGAAAAATTAATAATAATTGCTTTAGATATATATTAGTTAT
TTTTCTCTTTTGTGGATACAAAATATCTAACAATATACAACTTGAGGAAA
GACTACTTTGTTTGGTTTTAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_d12.g1 MSMg01no367_d12.g1 CHROMAT_FILE:
MSMg01no367_d12.g1 PHD_FILE: MSMg01no367_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:18 2005
         (380 letters)



>mm_chr2_8927951_8928730
          Length = 780

 Score =  688 bits (356), Expect = 0.0
 Identities = 374/380 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattttcaagtttattttatttagaagaccaaaatagcccttatagtgctgtaattgaaa 60
           |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 aattttcacgtttattttatttagaagaccaaaatagcgcttatagtgctgtaattgaaa 260

                                                                       
Query: 61  atgttccaattttccatctaaagggttgattctacaggtgtgtctacacacacgtggagt 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgttccaattttccatcaaaagggttgattctacaggtgtgtctacacacacgtggagt 320

                                                                       
Query: 121 caggagggcagtactgctgtcttcctctgtggctctctgccttattcttttcagatactt 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggagggcagtgctgctgtcttcctctgtggctctctgccttattcttttcagatactt 380

                                                                       
Query: 181 cctctcattccatgagtagtgtaccacttggctggtcaacaattcccaatgatccttctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctctcattccatgagtagtgtaccacttggctggtcaacaattcccaatgatccttctg 440

                                                                       
Query: 241 tctcttagccccagaccagctctacaactacagacatacaaccttttgccctgttttcac 300
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctccaagccccagaccagctctacaactacagacatacaaccttttgccctgttttcac 500

                                                                       
Query: 301 atggatgctgagaatccaaagttgggtcatgtttgtgtgcaagtgctttattatctgagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atggatgctgagaatccaaagttgggtcatgtttgtgtgcaagtgctttattatctgagt 560

                               
Query: 361 catctccttaggtcccaaca 380
           ||||||||||||||||||||
Sbjct: 561 catctccttaggtcccaaca 580


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space:   286041
Effective search space used:   286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)