BAC Information

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BAC

Clone NameMSMg01-367D20
Chromosome2 (Build37)
Map Location 35,777,521 - 35,777,949
singlet/doubletsinglet
Overlap geneTtll11
Upstream geneTraf1, Hc, AI182371, Rab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194, Dab2ip
Downstream geneNdufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236, Mrrf, LOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367D20.T7 (MSMg01no367_d20.b1)MSMg01-367D20.TJ (MSMg01no367_d20.g1)
ACCAG474760AG474761
length783879
length of high quality
(start - end)		526 (45 - 570)40 (121 - 160)
definitionCHROMAT_FILE: MSMg01no367_d20.b1 PHD_FILE: MSMg01no367_d20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:20 2005CHROMAT_FILE: MSMg01no367_d20.g1 PHD_FILE: MSMg01no367_d20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:20 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTGCATACTTCTGACTTCCTCCACATCTGGCTGCAAATCTCGAGC
CTCTCAGTTCTTCCCCCAGTTCCTTCCTCTGCCTGGATGTCCCGCCTTTC
CTATCCCGCCTCAGCTGTAGGCCGTCGGCTCTTTATTAAACTGATTAGAG
GTAACAGAGAAGAATGTTTACAAAATACGATGCAGGTGCTGAGTAAATAG
AATAACAATCTCCAAGTCCAGGCAGAGCTCAGCTCTCTGCTGGTGCAGAA
ATCAACATTTGAATAGTACAAAGACAACCTTTGCACAATGTACAAGGGAT
TAGACCAACAAACAAATATTAGAGAATTAAATTCATGAGATTATGTCATG
TATGGTTTAAAATTATTTTAGTCAGGTAGCCATCTCTAGATGACAAAGAC
AGCAGATCACATGCACTGAGTAAGATTTTTAGCAATCTAAAGTCACAGAA
TGGAAGCCTGTGCTATCTTGAAATAAGATGCAGTTGTTTGATTTACTTTG
TTTTTTTTTTTTTTTTTTTGTGGTTTTTTTTTTTTTTGGGATTTGATTCC
CGAGACCCGCCCTGTTTTTGTGTGTTACTCTTGGCTGGTCTGGAACTCTT
CTGGTAATTTAGTTTATTTCCTAAATTCTCTTTTCTCTTGCTTTCCTGTT
TTCTATATTATTGTTGGGCTTCCTCTACTCCATTTTTATGTTCCCCTTCT
CCATCCCTCTTTTCGTTTCCTCCCCCTTTTACN

TTTTTTTTCTTCCTTTCCCTTTTCCTGTCCTTCTTCCTTCTTTCTCCTCT
ATATTATGTTTATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTCCCGCGCAATTCCATGCCCCATGGGATTTTAGGAGGGAGG
GGGTTTTCCCAGTTCCAGGGTGCCAAAATGACTGAAGGCTCTATGAGGCT
GCGATTACATAATGCTCCCTCCTCTTCTTAAGCACTGAACAGGAAAAGCA
GGGGCATAGACGCCTACAGCCACCATGAATCTGCTGGGTGATGTCAGGTC
TTGCCCCAGCATGTAACGTGCACTCTTCCTGTGATGCTCTCCCTCTCTCC
CTCTACCCTCCCCTGTTATGTTTTTTTGTGACGCCATATGCTATCGTCGT
TGTTCACAGGCATATCTTCCTGATACCAATCCCCCGTTTTGTTCTACTCC
TACTACCCTCTTCTCTTGCATTTTGGACTTTTGTCCCTTTCGTCCTTCTC
GCCTTCTCGCACAACTCCCTACCCTTCTCTTATCCTTCTTTCCTTCCTTT
CTCTCTCGCTTTTTTTTCCTTATCTTATTCCGCTCCTCCGCATCCCTCTC
CATCCTTTCCATTTCCTTTCTCTTCTCACTATATTATTATTTTCCCGTTA
CCCCTTCCTGATTTTCCCCGTTCACTTCTTCCCTTTTTTCCTTCTTTCGT
TTTCTTCATTTTCTTTCTCGTTTTAGCTTTCTCATCTTCCTCCTATTCTT
CTTTTTCCTCTCCCATTTTTACTCATCTCCTTATGTACACATTCTATCCT
CTTTCCTTACCCCGCTCCATATTCTCTTCCCTTCCCCTCCCTTCTTCTTC
CCCCCTCCTCTCTTCCCCTCATCACCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_d20.b1 MSMg01no367_d20.b1 CHROMAT_FILE:
MSMg01no367_d20.b1 PHD_FILE: MSMg01no367_d20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:20 2005
         (526 letters)



>mm_chr2_35777020_35777949
          Length = 930

 Score =  770 bits (398), Expect = 0.0
 Identities = 420/430 (97%), Gaps = 6/430 (1%)
 Strand = Plus / Minus

                                                                       
Query: 76  ttccttcctctgcctggatgtcccgcctttcctatcccgcctcagctgtaggccgtcggc 135
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 930 ttccttcctctgcctggatgtcccgcctttcctatcccgcctcagctataggccgtcagc 871

                                                                       
Query: 136 tctttattaaactgattagaggtaacagagaagaatgtttacaaaatacgatgcaggtgc 195
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 tctttattaaactgatcagaggtaacagagaagaatgtttacaaaatacgatgcaggtgc 811

                                                                       
Query: 196 tgagtaaatagaataacaatctccaagtccaggcagagctcagctctctgctggtgcaga 255
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 tgagtaaacagaataacaatctccaagtccaggcagagctcagctctctgctggtgcaga 751

                                                                       
Query: 256 aatcaacatttgaatagtacaaagacaacctttgcacaatgtacaagggattagaccaac 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 aatcaacatttgaatagtacaaagacaacctttgcacaatgtacaagggattagaccaac 691

                                                                       
Query: 316 aaacaaatattagagaattaaattcatgagattatgtc-----atgtatggtttaaaatt 370
           ||||||||||||||||||||||||||||||||||||||     |||||||||||||||||
Sbjct: 690 aaacaaatattagagaattaaattcatgagattatgtcaagttatgtatggtttaaaatt 631

                                                                       
Query: 371 attttagtcaggtagccatctctagatgacaaagacagcagatcacatgcactgagtaag 430
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 attttagtcaggtagccatctctagatgacaaagacagcagatcacatgcactgagtaag 571

                                                                       
Query: 431 atttttagcaatctaaagtcacagaatggaagcctgtgctatcttgaaataagatgcagt 490
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 a-ttttagcaatctaaagtcacagaatggaagcctgtgctatcttgaaataagatgcagt 512

                     
Query: 491 tgtttgattt 500
           ||||||||||
Sbjct: 511 tgtttgattt 502


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 930
Length adjustment: 10
Effective length of query: 516
Effective length of database: 920
Effective search space:   474720
Effective search space used:   474720
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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