BAC Information

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BAC

Clone NameMSMg01-367G01
Chromosome2 (Build37)
Map Location 56,290,314 - 56,290,850
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnj3
Downstream geneLOC227920, Nr4a2, LOC100041900, LOC100042910, Gpd2, LOC271788
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-367G01.T7 (MSMg01no367_g01.b1)MSMg01-367G01.TJ (MSMg01no367_g01.g1)
ACCAG474864AG474865
length723748
length of high quality
(start - end)
558 (7 - 564)538 (80 - 617)
definitionCHROMAT_FILE: MSMg01no367_g01.b1 PHD_FILE: MSMg01no367_g01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:31 2005CHROMAT_FILE: MSMg01no367_g01.g1 PHD_FILE: MSMg01no367_g01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:04:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCGGAGAGGATCCGCGGAATTCACTGATTCATGAGCATGTGAGGTGTTT
TCACATTCCTTTAAATTTTATGTCTTTTGCCACAAGGGCAATTTAACTTT
CATATGCAGAAAGTTTCTTTTTTATTTTTTTATTTTTTTATTTTTTTGTT
TTCATGTTGTAGCTAGGAGTTCAAACACTATACTAAATAAGAGTAGAGAG
AGTGAATGCCCTGTCATTCCAGATTTTCAAGAAAACGCTCTCAGGATTCC
TTCATTTAGTATAATATTACTATAAGTGTGTTGTGTATAACTTTCATTAT
GTTGAGGTATGTTCCTTCTAATCTTAGATTCTTCAGCTTTGAATTTCTAA
ATGAGATTAAACTTTGTCTTTTCTACATGGTCTGAAATGATCATGCTTAC
TCTATCCTTAAGTCTATGCATGTTCTGAATTACACTTCCTGACATGTGTT
TATCAATCTTTAATCATAGAAAGAATCCAACCTTCTCATGTTTGCAGATG
TCTATAACTCTATTGATTATTCTCTGGGTCAGNTGGGTTATTTTTTTCTT
TGTTGCTCTTGATTTTTTTTTATTGTTTCCCACAAGCCTGTTGCTTTGGG
CTTGCCTTTTTGTCTGACTCTTATTTGTTTACAGACTCCCTTCATAAATA
TTTCTTTCTAGGATTTCTTGCCCGAAACTGGCTTTTTTTCTTTACATATC
CCTTTTGTCTTTTTTTATCCGTT
TTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAAGCAGGAACAGTCACAGG
AATTTACCCAAAGTCAGAAGCTAGAAAGCCACAGTTCTGAGATTCAGACT
GAGGTACTCTGGCCGCCTAACTAAGAAAGCACTGTTGATTTTGTTACCTG
TAAAGCTTACTCTGAACAGTGCTAAGGGAGAAAAATCAGCACATTTTATT
TCTAAAAGTCTAAGGATTGAAATGTTTTATGTTCTTTTTTGTCCTCAAAG
GAAAATCAAGTTACGCAAGAAGGCCAGTATATAATAGCTTTGTAGATCAT
ATACTTCTCAATCACAAACTTTTCTCAACTCTTTTTCAAGCCTAGATCAT
GATGGCATGAGTTGTCAGATTTAGTCACTCCTCATAAGTTCATTTGATAA
CCATTTATTTTTCCTCAATACATCCTCCATAGATGTTAATAAAATTAAAC
ATGACCTCTAAGAACATTCCTTGTGTTTATGTTAAGTTAAAATAAAAATA
AATTATAACCAGACAAATTGATTCTTAGTTTTGATGTTAAACCCAAGTAC
CTTGTATACAAACTACTAAAGTAGATATCTTGGGTCATAGTCTAGTGGAA
ATCATAACACATGCTTGAACAATCCAGAATAAGCCATTATGTTCTGTATA
TCTGGAAAGTTAATAATAATCCTATGAACCCTACCCTTGTACCTTGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no367_g01.g1 MSMg01no367_g01.g1 CHROMAT_FILE:
MSMg01no367_g01.g1 PHD_FILE: MSMg01no367_g01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:31 2005
         (538 letters)



>mm_chr2_56290114_56291051
          Length = 938

 Score = 1007 bits (521), Expect = 0.0
 Identities = 533/537 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaagcaggaacagtcacaggaatttacccaaagtcagaagctagaaagccacagttctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaagcaggaacagtcacaggaatttacccaaagtcagaagctagaaagccacagttctg 260

                                                                       
Query: 61  agattcagactgaggtactctggccgcctaactaagaaagcactgttgattttgttacct 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agattcagattgaggtactctggccgcctaactaagaaagcactgttgattttgttacct 320

                                                                       
Query: 121 gtaaagcttactctgaacagtgctaagggagaaaaatcagcacattttatttctaaaagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtaaagcttactctgaacagtgctaagggagaaaaatcagcacattttatttctaaaagt 380

                                                                       
Query: 181 ctaaggattgaaatgttttatgttcttttttgtcctcaaaggaaaatcaagttacgcaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 ctaaggattgaaatgttttatgttcttttttgtcctcaaaggaaaatcaagttacacaag 440

                                                                       
Query: 241 aaggccagtatataatagctttgtagatcatatacttctcaatcacaaacttttctcaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaggccagtatataatagctttgtagatcatatacttctcaatcacaaacttttctcaac 500

                                                                       
Query: 301 tctttttcaagcctagatcatgatggcatgagttgtcagatttagtcactcctcataagt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctttttcaagcctagatcatgatggcatgagttgtcagatttagtcactcctcataagt 560

                                                                       
Query: 361 tcatttgataaccatttatttttcctcaatacatcctccatagatgttaataaaattaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcatttgataaccatttatttttcctcaatacatcctccatagatgttaataaaattaaa 620

                                                                       
Query: 421 catgacctctaagaacattccttgtgtttatgttaagttaaaataaaaataaattataac 480
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| 
Sbjct: 621 catgacctctaagaacattccttgtatttatgttaagttaaaataaaaataaattataag 680

                                                                    
Query: 481 cagacaaattgattcttagttttgatgttaaacccaagtaccttgtatacaaactac 537
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagacaaattgattcttagttttgatgttaaacccaagtaccttgtatacaaactac 737


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space:   489984
Effective search space used:   489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)