Query= MSMg01no367_k19.b1 MSMg01no367_k19.b1 CHROMAT_FILE:
MSMg01no367_k19.b1 PHD_FILE: MSMg01no367_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:54 2005
(483 letters)
>mm_chr2_142507381_142508262
Length = 882
Score = 818 bits (423), Expect = 0.0
Identities = 465/479 (97%), Gaps = 3/479 (0%)
Strand = Plus / Plus
Query: 6 ggaattcaaacccatgctcattcccaacaaaggctctattagcactcaacaagtgcagat 65
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct: 206 ggaattcaaacccatggtcattcccaacaaaggctctggtagcactcaacaagtgcagat 265
Query: 66 gagaaatgggggtggatttactctactctaaaattacagcaaaagtcaaaagtgatggcc 125
|| |||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 266 gacaaat-ggggcggatttactctactctaaaattacagcaaaagtcaaaagtaatggcc 324
Query: 126 ccggtattatttcgtttaaactaatcagatattgggaggcaaagtgaggaatataagtta 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccggtattatttcgtttaaactaatcagatattgggaggcaaagtgaggaatataagtta 384
Query: 186 tcagccatcattacatactggaaatcgaaaggctatggatgagcacagatgtagccctga 245
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 385 tcagccatcactacatactggaaatcaaaaggctatggatgagcacagatgtagccctga 444
Query: 246 ctttagcctaatgacataactagttccagaactgaattctttcaggcctcaacttttcat 305
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cttcagcctaatgacataactagttccagaactgaattctttcaggcctcaacttttcat 504
Query: 306 ctgtaaaatggacttttgaggcaccgatgaatgaaggtgaataaggtgacgttaggagca 365
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct: 505 ctgtaaaatggacttttggggcaccaatgaatgaaggtgaataaggtgacgttaggagca 564
Query: 366 caatgctcaggtctcaggcctgactgcccctccctcagtcctaaat-aggatgggggtgc 424
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 565 caatgctcaggtctcaggcctgactgcccctccctcagtcctaaatgag-atgggggtgc 623
Query: 425 cttcatcaaacacctccactcaaggctcggggatcttcacagacgaggcaggaagactg 483
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cttcatcaaacacctccactcaaggctcggggatcttcacagacgaggcaggaagactg 682
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 882
Length adjustment: 10
Effective length of query: 473
Effective length of database: 872
Effective search space: 412456
Effective search space used: 412456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no367_k19.g1 MSMg01no367_k19.g1 CHROMAT_FILE:
MSMg01no367_k19.g1 PHD_FILE: MSMg01no367_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:54 2005
(452 letters)
>mm_chr2_142706924_142707775
Length = 852
Score = 859 bits (444), Expect = 0.0
Identities = 450/452 (99%)
Strand = Plus / Minus
Query: 1 accatggctgtgccctaccattgtgtgcaatagatgctacccgaatctagatttctctgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 accatggctgtgccctaccattgtgtgcaatagatgctacccgaatctagatttctctgt 593
Query: 61 gtgggtttgatgtgatagagctttagtcccttgtttatctttataaacacatgtggctgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 gtgggtttgatgtgatagagctttagtcccttgtttatctttataaacacatgtggctgt 533
Query: 121 tctcaggtcttttctcagtgacttgaaggaagctaagggcctctttgtgttggagagctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 tctcaggtcttttctcagtgacttgaaggaagctaagggcctctttgtgttggagagctt 473
Query: 181 cctatttcaagtgctgagctgagtctgtcagattctgcaaatgtaagcagaggaaccctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 cctatttcaagtgctgagctgagtctgtcagattctgcaaatgtaagcagaggaaccctg 413
Query: 241 aactgtgaaggaggctcggtggaagcttcacagtgcaggagaaggcagctgaattaaaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 aactgtgaaggaggctcggtggaagcttcacagtgcaggagaaggcagctgaattaaaat 353
Query: 301 gcactagtaagcatcaaagactagaaaggtgacactcagaggtgagggcttgcgtgatcc 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 352 gcactagtaagcatcaaagactagaaaggtgatactcagaggtgagggcttgcgtgatcc 293
Query: 361 agaagtagaactgctcatctgatgtcatcctcttatctcaagatgagacttcttggcccc 420
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 292 agaagtagaactgctcatctgatgtcatcctcttatctcaagatgagacctcttggcccc 233
Query: 421 gggcagtcactggctttgctttgtgcattgcc 452
||||||||||||||||||||||||||||||||
Sbjct: 232 gggcagtcactggctttgctttgtgcattgcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space: 372164
Effective search space used: 372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
