Query= MSMg01no367_n18.b1 MSMg01no367_n18.b1 CHROMAT_FILE:
MSMg01no367_n18.b1 PHD_FILE: MSMg01no367_n18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:08 2005
(495 letters)
>mm_chr2_24339422_24340316
Length = 895
Score = 733 bits (379), Expect = 0.0
Identities = 412/423 (97%), Gaps = 3/423 (0%)
Strand = Plus / Minus
Query: 5 gaattctcttctctctctaccacactacatccagcaagaagtggttttggactggattag 64
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 422 gaattctcttctctctctaccacactacatccagtaagcagtggttttggactggattag 363
Query: 65 tttattggcatcacactgggtcatcaagatgatgacttaatgaatttttccttaaatatg 124
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 362 tttattggcatcacactgggtcatcgagatgatgacttaatgaatttttccttaaatatg 303
Query: 125 gcatttggcagatacaaagctgcaaatatatcttcaggctccaactgcaaacttgaagtg 184
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gcatttggcagatacaaagatgcaaatatatcttcaggctccaactgcaaacttgaagtg 243
Query: 185 acttctcagggaaaacagatggttcc-gcaggaaccatacgggtaagtatgatgacctga 243
||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 242 acttctcagggaaaagagatgg-tccagcaggaaccatacgggtaagtatgatgacctga 184
Query: 244 gttgaatccctaggacccaccttgtactatggaaggagaagaccatctcttgcaagcaag 303
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 gttgaattcctaggacccaccttgtactatggaaggagaagaccatctcttgcaagcaag 124
Query: 304 ccgccctctgatcttcaacacctggaaaggacaagtttcagaaacatgctgtaaaaatag 363
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 ccgccttctgatcttcaacacctggaaaggacaagtttcagaaacatgctgtaaaaatag 64
Query: 364 tttgataaattttgattttt-gacttcacttaaaagtttactgtctagaactggtattac 422
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 63 tttggtaaattttgattttttgacttcacttaaaagtttactgtctagaactggtattac 4
Query: 423 ctt 425
|||
Sbjct: 3 ctt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space: 429225
Effective search space used: 429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no367_n18.g1 MSMg01no367_n18.g1 CHROMAT_FILE:
MSMg01no367_n18.g1 PHD_FILE: MSMg01no367_n18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:08 2005
(485 letters)
>mm_chr2_24239350_24240234
Length = 885
Score = 801 bits (414), Expect = 0.0
Identities = 465/488 (95%), Gaps = 14/488 (2%)
Strand = Plus / Plus
Query: 1 cacagatagctaaatccaactcctgacttcctcccataagcttccctgcctggggctttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacagatagctaaatccaactcctgacttcctcccataagcttccctgcctggggctttt 260
Query: 61 ccatgtcagcaaatgtcattgctagcacttgccaaagtctagaagctgcccttgacttcc 120
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 ccatgtcagcaaatgtcattgctagcacttgccgaagtctagaagctgcccttgacttcc 320
Query: 121 ctcccatctttataccttccatctgtacgcagccaggcttctcagttgtccccaatgatg 180
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
Sbjct: 321 ctcccatctttataccttccatctgtacgcagtcaggcttctcagttgtgcccaatggcg 380
Query: 181 aactctcccttctatgccattattgaccttgcccaatagag-agtcctccctcatctggt 239
|||||| |||||||||||||||||||||||||||| | ||||||||| ||||||
Sbjct: 381 aactct-------atgccattattgaccttgcccaatagagca-tcctccctcgtctggt 432
Query: 240 cccctactccatcccaaagccacctaactggggttttgctcttaggtaggtacc--tgat 297
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 433 cccctactccatcccaaagccacctaactggggttttgctcttaggtag---cccctgat 489
Query: 298 ggtagtagtagataaatgatagtaaaaataaatgcataatctttggccttcaactcccaa 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ggtagtagtagataaatgatagtaaaaataaatgcataatctttggccttcaactcccaa 549
Query: 358 cttaaaatgcaccttgtgcacttgtgtaccttgtccattctggtgggccctgcctctcct 417
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 550 cttaaaatgcaccttgtgcacttgtgtaccttgttcattctggtgggccctgcctctcct 609
Query: 418 gtccctgaacttctcccagtgccagacccactgactgtttcctgaacattagacatttcc 477
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 610 gtccctgcacttctcccagtgccagacccactgactgtttcctggacattagacatttcc 669
Query: 478 cattccag 485
||||||||
Sbjct: 670 cattccag 677
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 885
Length adjustment: 10
Effective length of query: 475
Effective length of database: 875
Effective search space: 415625
Effective search space used: 415625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
