Query= MSMg01no367_p06.b1 MSMg01no367_p06.b1 CHROMAT_FILE:
MSMg01no367_p06.b1 PHD_FILE: MSMg01no367_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:15 2005
(529 letters)
>mm_chr2_136408618_136409547
Length = 930
Score = 1007 bits (521), Expect = 0.0
Identities = 524/525 (99%), Gaps = 1/525 (0%)
Strand = Plus / Plus
Query: 5 gaattccattacctctttctttaa-gaaaatttaatctacttcagaaagtaagcttatta 63
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccattacctctttctttaaagaaaatttaatctacttcagaaagtaagcttatta 264
Query: 64 atcataggccaatgaacactagtactttctcaataagtagttctaagacccacttttcag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atcataggccaatgaacactagtactttctcaataagtagttctaagacccacttttcag 324
Query: 124 acaactaaccatgctagcaaattctagttcacaagaaatctgacttgttttcagcagaca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acaactaaccatgctagcaaattctagttcacaagaaatctgacttgttttcagcagaca 384
Query: 184 cactatggtcaatgcaagatataaaatatcagaacagtggtaacttgtagtcaaagagat 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cactatggtcaatgcaagatataaaatatcagaacagtggtaacttgtagtcaaagagat 444
Query: 244 ttggtgagttcagcaacaacagagccaatgatatttgtgtcttcattgacagaaatctaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttggtgagttcagcaacaacagagccaatgatatttgtgtcttcattgacagaaatctaa 504
Query: 304 aagaaagtgttgtcctaacttagtctgtgatcatcctgatattctgatttaaaaaaaaaa 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aagaaagtgttgtcctaacttagtctgtgatcatcctgatattctgatttaaaaaaaaaa 564
Query: 364 catacacatgggcataaattttttattgtcttcaactggaaaaaatgtctggctcagcta 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 catacacatgggcataaattttttattgtcttcaactggaaaaaatgtctggctcagcta 624
Query: 424 tgcacaatcagtccttggggctctgaacttgaattgaaaacttttatcttttcaaaatag 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgcacaatcagtccttggggctctgaacttgaattgaaaacttttatcttttcaaaatag 684
Query: 484 gacatgttaattggagaaggaatttgcaaggttttttttttttaa 528
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gacatgttaattggagaaggaatttgcaaggttttttttttttaa 729
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 930
Length adjustment: 10
Effective length of query: 519
Effective length of database: 920
Effective search space: 477480
Effective search space used: 477480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no367_p06.g1 MSMg01no367_p06.g1 CHROMAT_FILE:
MSMg01no367_p06.g1 PHD_FILE: MSMg01no367_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:15 2005
(604 letters)
>mm_chr2_136586194_136587197
Length = 1004
Score = 1075 bits (556), Expect = 0.0
Identities = 591/606 (97%), Gaps = 11/606 (1%)
Strand = Plus / Minus
Query: 1 tttctacaactgtatctgttaaatgattttcttttttattgctaaagagttttgaaagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 976 tttctacaactgtatctgttaaatgattttcttttttattgctaaagagttttgaaagag 917
Query: 61 aagctggtatagaaagaaaaatgatgtaagacattcatgaaatattagtgtttccataac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916 aagctggtatagaaagaaaaatgatgtaagacattcatgaaatattagtgtttccataac 857
Query: 121 tatttcaggaaggctgtgcggtgccttcaaatctgcctgcctaaagcagtactttaggag 180
||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 856 tatttcaggaaggctgtgcggtgccttcaaatctgcctgcctaaagcagta---t----g 804
Query: 181 gacttttctggctcaagtttcatggcctaagatgttggtatgcagatttcatttctgcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 gacttttctggctcaagtttcatggcctaagatgttggtatgcagatttcatttctgcat 744
Query: 241 ttagcatcaccagagttaacctttttgttttcaagtatttcctcctggaggacattttaa 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 743 ttagcatcaccagagttaacctttttgttttcaagtatttactcctggaggacattttaa 684
Query: 301 tgattctattttgagatttaattcttcttttttcttttatgctcccaaggcaggtatgac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tgattctattttgagatttaattcttcttttttcttttatgctcccaaggcaggtatgac 624
Query: 361 cttgaatttgaacatctagttacatgttggtttccctgcaatgaatcaatttgtatcttc 420
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 cttgaatttgaacatctatttacatgttggtttccctgcaatgaatcaatttgtatcttc 564
Query: 421 tctcctatctcc-gttgttcagtattatataaatatttgttgaaa-tgtacctctcaaaa 478
|||||||||||| | |||||||||||| ||||||||||||| ||| ||||||||||||||
Sbjct: 563 tctcctatctccag-tgttcagtattacataaatatttgtt-aaagtgtacctctcaaaa 506
Query: 479 gtaagtgtccaactccaggctgtgaactgaatgccaccaagtctctactctctgtaccag 538
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 505 gtaagtgtccaactccaggctgtgaactgaatgccaccaagtctctaatctctgtaccag 446
Query: 539 tctttgatatttggattttctgaaacttttccactgacctctgagtttttacatcgtcct 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctttgatatttggattttctgaaacttttccactgacctctgagtttttacatcgtcct 386
Query: 599 tgaaac 604
||||||
Sbjct: 385 tgaaac 380
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
