BAC Information

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BAC

Clone NameMSMg01-368E05
Chromosome2 (Build37)
Map Location 143,434,779 - 143,435,346
singlet/doubletsinglet
Overlap genePcsk2
Upstream geneKif16b, Snrpb2, Otor, LOC668915, LOC668916
Downstream geneBfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368E05.T7 (MSMg01no368_e05.b1)MSMg01-368E05.TJ (MSMg01no368_e05.g1)
ACCAG475532AG475533
length734747
length of high quality
(start - end)		610 (37 - 646)568 (76 - 643)
definitionCHROMAT_FILE: MSMg01no368_e05.b1 PHD_FILE: MSMg01no368_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:39 2005CHROMAT_FILE: MSMg01no368_e05.g1 PHD_FILE: MSMg01no368_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTG
TTCTCCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTC
CACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATT
TAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCCTA
TTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCA
TTTGTCAATTCTCGATCTTACAGAGCAAGCCATTGCTGTTCTATTCAGGA
ATCTTTCCCCTGTTCCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCT
ATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGA
TTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCTTCTAC
ATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTCTTTC
TTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGT
GTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTC
TGTCTCTATACCAGTACCATGCAGTTTTTATCACAATTGCCCTGTAGTAA
AGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTTATCCTTGAG
AAGAGTTTTTGCTATCCTATGTTTTTTTGTTATT

AATTGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCACTTCTGATTCTTAAGCAGCAGGG
ATGGATAACAGGACTGAGGGCATAATGAATCCAGATGTGCCCATAGTTGA
GCATTTCCTCAGAGGTTTGGCCCAAATGTTACTGCTTTCCTGGGATCTTC
TGTCTACTTTTGTCTGTAGGAGGAAGCTCAAACTACAGTCGCCTCAAGAA
CCATGGAGAGATTCACAGCTCATATACGCATCCCCCAAACAAGGGATGAC
AGGGGAAACAGCAGATAACTTCTGTAGAGCCAGATGGCCATGAAGGTAAT
TAAGATGTGGCCTAGGGGAAATCAAGGTTTGAATTCATTAAAGGCATTGC
CAGTTATGTGCAGTGTATTACAGTTAGCACAACACAGGGTAGTTGGAGAT
TAAGTGAGCCCCATTGGTTCAAAAGTAGTCAGGAGTTGTATGGATAGGAA
CACGAGTGTAATTGCCAAAGACCTCTTTGCCTGTTAGATACATATACTCC
TCTCTGTAGTAAATGGCAGCCATGGAGAATGATTCTGTATTTGAACGGCA
TCGCACAGAACACAGGAGACTGATAGAGATTTGTAAATTCCCCAGCCCTG
AGATCTGGTGTTGATAAGAATGGAGATGATATGGTGGGATGTCTGAAAGA
ACCCAGATGGAAAGCCTGCCTTCCAAAAATTTAAACGCAAAAGACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_e05.g1 MSMg01no368_e05.g1 CHROMAT_FILE:
MSMg01no368_e05.g1 PHD_FILE: MSMg01no368_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:39 2005
         (568 letters)



>mm_chr2_143434579_143435546
          Length = 968

 Score = 1067 bits (552), Expect = 0.0
 Identities = 564/568 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacttctgattcttaagcagcagggatggataacaggactgagggcataatgaatccaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 cacttctgattcttaagcagcagggatggataacaggactgagggcataatgaatccaga 709

                                                                       
Query: 61  tgtgcccatagttgagcatttcctcagaggtttggcccaaatgttactgctttcctggga 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 708 tgtgcccatagttgagcatttcctcagaggtttggcccaaatgttactgctttcctggta 649

                                                                       
Query: 121 tcttctgtctacttttgtctgtaggaggaagctcaaactacagtcgcctcaagaaccatg 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 648 tcttctgtctacttttgtctgtaggaggaagctcaaactacagtcacctcaagaaccatg 589

                                                                       
Query: 181 gagagattcacagctcatatacgcatcccccaaacaagggatgacaggggaaacagcaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 gagagattcacagctcatatacgcatcccccaaacaagggatgacaggggaaacagcaga 529

                                                                       
Query: 241 taacttctgtagagccagatggccatgaaggtaattaagatgtggcctaggggaaatcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 taacttctgtagagccagatggccatgaaggtaattaagatgtggcctaggggaaatcaa 469

                                                                       
Query: 301 ggtttgaattcattaaaggcattgccagttatgtgcagtgtattacagttagcacaacac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ggtttgaattcattaaaggcattgccagttatgtgcagtgtattacagttagcacaacac 409

                                                                       
Query: 361 agggtagttggagattaagtgagccccattggttcaaaagtagtcaggagttgtatggat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 agggtagttggagattaagtgagccccattggttcaaaagtagtcaggagttgtatggat 349

                                                                       
Query: 421 aggaacacgagtgtaattgccaaagacctctttgcctgttagatacatatactcctctct 480
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 aggaacacaagtgtaattgccaaagacctctttgcctgttagatacatatactcctctct 289

                                                                       
Query: 481 gtagtaaatggcagccatggagaatgattctgtatttgaacggcatcgcacagaacacag 540
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 gtagtaaacggcagccatggagaatgattctgtatttgaacggcatcgcacagaacacag 229

                                       
Query: 541 gagactgatagagatttgtaaattcccc 568
           ||||||||||||||||||||||||||||
Sbjct: 228 gagactgatagagatttgtaaattcccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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