BAC Information

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BAC

Clone NameMSMg01-368E14
Chromosome2 (Build37)
Map Location 127,197,171 - 127,197,647
singlet/doubletsinglet
Overlap genenone
Upstream geneAtp8b4, Slc27a2, Hdc, Gabpb1, Usp8, LOC100043714, Usp50, Trpm7, 2010106G01Rik, Ap4e1, Blvra, Ncaph, 1700041B20Rik, 1810024B03Rik, LOC100043408, Ascc3l1, Ciao1, Tmem127, ENSMUSG00000074822, Stard7, Dusp2, Astl, Adra2b
Downstream geneA530057A03Rik, Fahd2a, Kcnip3, Prom2, Zfp661, Mrps5, Mal, LOC668892, Mall, Nphp1, 1500011K16Rik, Bub1, Acoxl, Bcl2l11, LOC100043424
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368E14.T7 (MSMg01no368_e14.b1)MSMg01-368E14.TJ (MSMg01no368_e14.g1)
ACCAG475550AG475551
length747744
length of high quality
(start - end)		481 (45 - 525)501 (67 - 567)
definitionCHROMAT_FILE: MSMg01no368_e14.b1 PHD_FILE: MSMg01no368_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:41 2005CHROMAT_FILE: MSMg01no368_e14.g1 PHD_FILE: MSMg01no368_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAGGCCTCTTGGACTACAGAGTGAGTTCCAGGACAGCCACAGCTAC
ACAAAGAAACTTTGTCTCAGAAAAGAAAGGAAAAAAAATATCAGTAGTTA
GGTGTCCTTGCAGCCTGAGCCACCAGGCCAGCAAAGGAAGAAGGGCTCCA
GCTGGAATAGCTGTGTCAGAGGCACCTGACAGAGAGCACTCTGGGAGGGA
CCCAGTGGAGCCTGCAACCTATGACCATGTTGGGCCACCCTCCACCCCTG
TGCTGGGAGGAAGGCTGGGTTTAACCCTTGCCTTCCCCTCCCCCCAACTG
TCCAGGGAATCCAAGTGGCAAGTCCAGCCAGCCTCTCACGCTCCCTCCCT
CACAGCTGCAGCTGGGATGGGCTGGGAAAGGGACACAGGGACACCTGGGT
CCCCTTAGTCACAGCCCAGAACTTTTCCCTCCTGAAGTGGCCCCAGGTCC
CCATGGGAATGGGGGGTGGGGTCGGNNGNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTNNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNN
NTTTNNTTTTTTTTTTTTTTTTTTNTNTTTTTTTTTTTTTTTTTTTTTTT
TTNNTTTTTTTTTTTTTTTTTTTTNTTTTNNTTTTTTTTTTTNTTTTTTT
NTTTTTTTTTNTTTTTTTTNNTTTTTTTTTNTTTTTTTTTTTTTTTN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTGTTCATGTGGCTATCTTCTTTTAGGTTTGTTGA
AAGATTACTTTCTTGCTTTTTCTAGAGCATAGTTTTCCTCCTTGTGTTGG
AGTTTTCCCTTTATTATCCTTTGAAGGGCTTGATTAGTGGAAAGATATTG
TGTAAATTTGGTTTTGTCATGGAATATCTTGGTTTCTCCATCTATGGTAA
TTGAGAGTTTTGCTGGATATAATAGTCTGGGCTGGCATTTGTGTTCTCTT
GGGGTCTGTATGACATCTGCCCAGGATCTTCTGGCTTTTATAGTTTCTGG
GGAGAAGTCAGGTATAATTCTGATAGGTCTGCCTTTATATGTTACTTGAC
CTTTTTCCCTTACTGAGTTTAATATTCTTTCTTTGTTTTGTGCATTTGGT
GTTTTGATTATTATGTGACAGAAGACATTTCTTTTCTGGTCCAAACTATT
TGGTGTTCTATAAACTTCTTGTATGTCTATAGGCATCTCTTTCTTTAAGT
TTTCTTCTATAATGTTGTTGAAGATATTTACTGACCCTTTAAGNTGGAAA
TCTTTCTTCTTGTCTTATACTATTATCCTTACGTTTGGTCTTCTCATTGT
GGTCTGGAATTCCTCCAATGTTTTGGGTTATAAACCTTCTCCTTCTTCTT
TTTTTTTGATGGCGAGTCCAATGTCCCCATGTGGACCTCCGGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_e14.b1 MSMg01no368_e14.b1 CHROMAT_FILE:
MSMg01no368_e14.b1 PHD_FILE: MSMg01no368_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:41 2005
         (481 letters)



>mm_chr2_127196891_127197771
          Length = 881

 Score =  899 bits (465), Expect = 0.0
 Identities = 474/477 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaggcctcttggactacagagtgagttccaggacagccacagctacacaaagaa 64
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 gaattcaaggccacatggactacagagtgagttccaggacagccacagctacacaaagaa 698

                                                                       
Query: 65  actttgtctcagaaaagaaaggaaaaaaaatatcagtagttaggtgtccttgcagcctga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 actttgtctcagaaaagaaaggaaaaaaaatatcagtagttaggtgtccttgcagcctga 638

                                                                       
Query: 125 gccaccaggccagcaaaggaagaagggctccagctggaatagctgtgtcagaggcacctg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 gccaccaggccagcaaaggaagaagggctccagctggaatagctgtgtcagaggcacctg 578

                                                                       
Query: 185 acagagagcactctgggagggacccagtggagcctgcaacctatgaccatgttgggccac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 acagagagcactctgggagggacccagtggagcctgcaacctatgaccatgttgggccac 518

                                                                       
Query: 245 cctccacccctgtgctgggaggaaggctgggtttaacccttgccttcccctccccccaac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 cctccacccctgtgctgggaggaaggctgggtttaacccttgccttcccctccccccaac 458

                                                                       
Query: 305 tgtccagggaatccaagtggcaagtccagccagcctctcacgctccctccctcacagctg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tgtccagggaatccaagtggcaagtccagccagcctctcacgctccctccctcacagctg 398

                                                                       
Query: 365 cagctgggatgggctgggaaagggacacagggacacctgggtccccttagtcacagccca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 cagctgggatgggctgggaaagggacacagggacacctgggtccccttagtcacagccca 338

                                                                    
Query: 425 gaacttttccctcctgaagtggccccaggtccccatgggaatggggggtggggtcgg 481
           ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 337 gaacttttccctcctgaagtgtccccaggtccccatgggaatggggggtggggtcgg 281


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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