NNNNNNNNNNNAAGAAGAAGAAATCAATCCATNNNNNNNNNNNNNNNNNC
CNNNNNNNNNNNNNNNNTTCAAAATTTCGCCGCTATAGACTCACTATATC
CAAGGACCGCGGATTCCTTTGCTTACCATATACAGATGCTATTTGCTGGG
TGGAAAACATTTCTAAATGGCTGGGAACTTAAGAACCCCCAGGGGGGGTN
TTAAAGCTGNNATACGNNNNNCCCCNNNNNNNNGGGGTATTATACCCCCC
CCCNNNNNAAAAAAGCCCCCCAAAAAAAGGGGTGGGGTGTTCCCCAAAAG
GGGGGCCCCCCTGGGGGGGGGGGGGAAGNTCCCCTCCTCAAAAAAAAAAA
AAAGTCCCCTCCCCCTTCCAAANACAAAAAAAAAAAGGAGGAGGTGTTTT
TNTCCCNNNCCNTTATTTTTCTCTCCTTCCGGGGGGGGGGGGTNNTTTTT
TTTTTCTTCTCAAAAATANCAAAAAAAAATGGGGTTAACCNCCAAAAAAA
AAAAAAGTGGGGGGTTGTTTTCCCCCCACCCCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCACAGATTTCTTTAAAACTATGTTATGTCAG
AAATCATACTTTGCCCTGGAGAACCTTCTAGACTTATGAAAACAAGCTCA
CGTTCATCCTTGCCAACATGAGGAAAATCACATCCTGCTCATGGTGTTGT
GACGAGTAAGAGAGGCAAGCTTGAGGGTGCCTGCCATGAAGACTTGACAC
ATCTTTTCATCATGCTAAAGAGTGAGCTGAGAGTCATCGTAAAGAGACAC
AATGGCCTAAAATTAGTTTCTACTTCTTATGCTATGTTGGGAATATTAAG
TCATATGTATTGCATTGCTTTTAAGAAACCTTAAGCATGGGTAAGTTTCA
ATGATCTGACTCTACAAGCCAGAGACAACATTTTATCTCTAGGCTATAGT
TATGTTGAAGAATCTATGCAGTCTAAACAAGTGGTCTGTTCTATGGGGTC
ATGCTGCCCTCAGTCTGGATAAATTAGGGTTTTAGTAAAGTACTGCTTCT
CTGCCCTATGCATGACCTTTTTCTTAAAAGCATAGCTTTTAATAACCATT
TTTATTAGAAAAAGTTGACAGAAATAGATAATTAAGGCAAAAGTCAAAAA
GTAAGAGATTCACAAAAAGACGGTACCTGCTGTGTATTTTCAGTGTGGTT
CATGGTTAAATGCAAATTCCCACAGAAGTTACTTGTAAGCCT

Query= MSMg01no368_h03.g1 MSMg01no368_h03.g1 CHROMAT_FILE:
MSMg01no368_h03.g1 PHD_FILE: MSMg01no368_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:53 2005
         (587 letters)



>mm_chr2_116441744_116442730
          Length = 987

 Score = 1127 bits (583), Expect = 0.0
 Identities = 586/587 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacagatttctttaaaactatgttatgtcagaaatcatactttgccctggagaaccttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacagatttctttaaaactatgttatgtcagaaatcatactttgccctggagaaccttct 260

                                                                       
Query: 61  agacttatgaaaacaagctcacgttcatccttgccaacatgaggaaaatcacatcctgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agacttatgaaaacaagctcacgttcatccttgccaacatgaggaaaatcacatcctgct 320

                                                                       
Query: 121 catggtgttgtgacgagtaagagaggcaagcttgagggtgcctgccatgaagacttgaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catggtgttgtgacgagtaagagaggcaagcttgagggtgcctgccatgaagacttgaca 380

                                                                       
Query: 181 catcttttcatcatgctaaagagtgagctgagagtcatcgtaaagagacacaatggccta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catcttttcatcatgctaaagagtgagctgagagtcatcgtaaagagacacaatggccta 440

                                                                       
Query: 241 aaattagtttctacttcttatgctatgttgggaatattaagtcatatgtattgcattgct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaattagtttctacttcttatgctatgttgggaatattaagtcatatgtattgcattgct 500

                                                                       
Query: 301 tttaagaaaccttaagcatgggtaagtttcaatgatctgactctacaagccagagacaac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttaagaaaccttaagcatgggtaagtttcaatgatctgactctacaagccagagacaac 560

                                                                       
Query: 361 attttatctctaggctatagttatgttgaagaatctatgcagtctaaacaagtggtctgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attttatctctaggctatagttatgttgaagaatctatgcagtctaaacaagtggtctgt 620

                                                                       
Query: 421 tctatggggtcatgctgccctcagtctggataaattagggttttagtaaagtactgcttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 621 tctatggggtcatgctgccctcagtctggataaattagggttttagtaaagtactgcatc 680

                                                                       
Query: 481 tctgccctatgcatgacctttttcttaaaagcatagcttttaataaccatttttattaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctgccctatgcatgacctttttcttaaaagcatagcttttaataaccatttttattaga 740

                                                          
Query: 541 aaaagttgacagaaatagataattaaggcaaaagtcaaaaagtaaga 587
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaaagttgacagaaatagataattaaggcaaaagtcaaaaagtaaga 787


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 987
Length adjustment: 10
Effective length of query: 577
Effective length of database: 977
Effective search space:   563729
Effective search space used:   563729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)